Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 8.0e-89 330.5 178 100.0
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.4e-85 319.7 175 98.9
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 9.2e-85 317.0 175 96.6
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 3.4e-79 298.5 175 89.7
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 7.5e-79 297.4 175 88.6
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.4e-77 293.1 175 88.0
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.2e-76 290.0 175 86.3
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.7e-76 288.9 175 85.1
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 5.6e-74 281.2 175 84.6
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 7.3e-74 280.8 176 83.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 6.2e-73 277.7 175 84.0
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 6.2e-73 277.7 175 84.6
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 8.1e-73 277.3 175 82.9
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.4e-72 276.6 175 81.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 2.3e-72 275.8 175 81.7
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.3e-72 275.8 175 83.4
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 6.8e-72 274.2 175 82.9
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 6.8e-72 274.2 175 83.4
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 8.9e-72 273.9 175 80.6
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.9e-72 273.9 175 82.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.2e-71 273.5 175 81.7
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.2e-71 273.5 175 81.7
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.2e-71 273.5 175 82.3
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.2e-71 273.5 175 81.7
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.5e-71 273.1 175 79.4
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.0e-71 272.7 175 81.1
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.4e-71 271.9 175 82.3
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.4e-71 271.9 175 81.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 4.4e-71 271.6 175 81.7
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 9.9e-71 270.4 175 80.6
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.3e-70 270.0 176 79.0
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.7e-70 269.6 175 80.0
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 2.9e-70 268.9 175 81.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.8e-70 268.5 175 80.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.9e-70 268.1 175 80.6
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 8.4e-70 267.3 175 80.6
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 8.4e-70 267.3 175 79.4
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.4e-70 267.3 175 79.4
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.1e-69 266.9 175 80.0
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.1e-69 266.9 175 79.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-69 266.5 175 79.4
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.4e-69 266.5 175 78.3
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.4e-69 266.5 175 80.6
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.9e-69 266.2 175 78.9
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-69 266.2 175 78.9
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.4e-69 265.8 174 79.3
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.4e-69 265.8 175 80.6
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.4e-69 265.8 175 78.9
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.2e-69 265.4 175 81.1
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.2e-69 265.4 175 80.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.2e-69 265.4 175 80.6
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 79.4
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 78.9
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 80.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 78.3
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 78.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 4.1e-69 265.0 175 78.9
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 5.4e-69 264.6 175 78.3
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.4e-69 264.6 175 79.4
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 5.4e-69 264.6 173 79.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 7.1e-69 264.2 175 78.9
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 7.1e-69 264.2 175 80.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 9.2e-69 263.8 175 79.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.2e-68 263.5 175 80.0
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.6e-68 263.1 175 77.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.7e-68 262.3 175 77.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.7e-68 262.3 175 77.1
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 4.6e-68 261.5 175 77.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.6e-68 261.5 175 78.9
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.6e-68 261.5 175 79.4
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 4.6e-68 261.5 175 77.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 6.0e-68 261.2 175 77.7
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.0e-68 261.2 175 78.9
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.8e-68 260.8 175 80.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.3e-67 260.0 175 78.9
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-67 259.6 175 78.3
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 8.6e-67 257.3 175 78.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.9e-66 256.1 175 76.0
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 4.3e-66 255.0 175 77.7
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 5.6e-66 254.6 175 76.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 7.3e-66 254.2 175 77.7
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.6e-65 253.1 175 76.0
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.6e-65 253.1 175 77.1
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.1e-65 252.7 175 77.1
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.8e-65 252.3 175 74.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.8e-65 252.3 176 74.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.8e-65 252.3 154 84.4
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 8.1e-65 250.8 175 75.4
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.1e-64 250.4 175 75.4
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.4e-64 250.0 175 76.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.4e-64 250.0 175 76.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.4e-64 250.0 175 76.0
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.8e-64 249.6 175 74.9
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.4e-64 249.2 175 73.1
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 2.4e-64 249.2 175 73.1
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.1e-64 248.8 175 72.0
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.9e-64 247.7 160 79.4
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 9.0e-64 247.3 175 73.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.0e-63 246.1 175 72.6
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.6e-63 245.7 175 73.7
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.4e-63 245.4 175 72.0
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.4e-63 245.4 175 73.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.4e-63 245.0 175 72.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.8e-63 244.6 190 71.1
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 7.6e-63 244.2 175 72.6
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 7.6e-63 244.2 175 72.6
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 7.6e-63 244.2 175 75.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 9.9e-63 243.8 175 71.4
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-62 243.0 175 72.0
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-62 243.0 175 72.0
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 1.7e-62 243.0 175 72.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.7e-62 243.0 175 72.0
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.7e-62 243.0 175 72.0
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.9e-62 242.3 190 70.0
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.8e-62 241.9 175 72.0
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.8e-62 241.9 175 73.1
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 4.9e-62 241.5 175 70.3
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.4e-62 241.1 175 72.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 1.1e-61 240.4 175 71.4
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.1e-61 240.4 175 70.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.4e-61 240.0 175 70.9
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.2e-61 238.8 175 69.7
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.2e-61 238.8 175 70.9
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.6e-60 236.5 175 70.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.7e-60 235.7 224 59.8
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.7e-60 235.7 175 69.7
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 6.0e-60 234.6 175 70.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 8.7e-59 230.7 175 69.1
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.9e-58 229.6 227 58.6
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 3.4e-55 218.8 167 66.5
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.3e-51 206.1 176 64.2
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.5e-50 202.6 175 65.1
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.3e-50 201.8 134 76.9
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.7e-49 198.7 134 77.6
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.8e-46 188.7 134 73.9
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.0e-43 180.6 165 63.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 6.5e-38 161.4 134 63.4
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.5e-34 149.4 91 85.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 7.6e-31 137.9 175 45.7
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.0e-30 137.5 137 59.1
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 8.5e-30 134.4 85 82.4
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.9e-28 127.9 128 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.8e-24 116.7 175 36.0
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.1e-24 115.5 236 37.7
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 9.1e-24 114.4 131 51.1
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.4e-21 107.1 175 36.6
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.1e-20 103.2 162 45.1
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.0e-19 100.9 175 36.0
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.4e-19 100.5 175 34.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 6.3e-17 91.7 66 74.2
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 3.4e-15 85.9 70 64.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 9.4e-13 77.8 50 74.0
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 9.7e-10 67.8 156 37.8
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.4e-08 63.9 42 78.6
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.4e-08 63.2 42 78.6
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 7.0e-08 61.6 169 30.2
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 9.1e-08 61.2 40 82.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.5e-07 59.3 42 76.2
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.0e-06 57.8 93 43.0


User provided reference genes

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