Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G168600 Glycine max HOM05D003363 ORTHO05D003952 2.2e-51 205.3 100 100.0
Glyma.13G086300 Glycine max HOM05D003363 ORTHO05D003952 5.2e-45 184.1 101 91.1
Phvul.008G170300 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 4.6e-41 171.0 101 85.1
TPR.G37445 Trifolium pratense HOM05D003363 ORTHO05D003952 4.6e-41 171.0 100 84.0
VMungo0647G1398 Vigna mungo HOM05D003363 ORTHO05D003952 7.8e-41 170.2 99 84.8
Ca_05565_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 8.6e-40 166.8 99 82.8
Lj4g0019567 Lotus japonicus HOM05D003363 ORTHO05D003952 1.1e-39 166.4 101 84.2
arahy.Tifrunner.gnm1.ann1.C8INVP Arachis hypogaea HOM05D003363 ORTHO05D003952 5.6e-39 164.1 100 81.0
Lalb_Chr13g0297431 Lupinus albus HOM05D003363 ORTHO05D003952 3.6e-38 161.4 101 80.2
Psat4g062720 Pisum sativum HOM05D003363 ORTHO05D003952 8.1e-38 160.2 96 82.3
Medtr4g104230 Medicago truncatula HOM05D003363 ORTHO05D003952 2.0e-36 155.6 98 79.6
arahy.Tifrunner.gnm1.ann1.M32IQ6 Arachis hypogaea HOM05D003363 ORTHO05D003952 1.6e-33 146.0 101 70.3
arahy.Tifrunner.gnm1.ann1.1ZZG3Z Arachis hypogaea HOM05D003363 ORTHO05D003952 2.1e-33 145.6 101 70.3
Thecc.03G122500 Theobroma cacao HOM05D003363 ORTHO05D003952 1.5e-28 129.4 99 62.6
Cfa018894 Carpinus fangiana HOM05D003363 ORTHO05D003952 2.0e-28 129.0 100 61.0
QL10p005254 Quercus lobata HOM05D003363 ORTHO05D003952 7.6e-28 127.1 100 61.0
Prupe.5G157300 Prunus persica HOM05D003363 ORTHO05D003952 1.7e-27 125.9 101 61.4
Duzib205G2021 Durio zibethinus HOM05D003363 ORTHO05D003952 3.8e-27 124.8 101 60.4
Lsat_1_v5_gn_5_9541 Lactuca sativa HOM05D003363 ORTHO05D003952 3.8e-27 124.8 94 62.8
CiPaw.11G012200 Carya illinoinensis HOM05D003363 ORTHO05D003952 6.4e-27 124.0 100 59.0
CAN.G352.7 Capsicum annuum HOM05D003363 ORTHO05D003952 1.4e-26 122.9 100 60.0
DCAR_026208 Daucus carota HOM05D003363 ORTHO05D003952 1.4e-26 122.9 100 58.0
SalBow5G5513 Salvia bowleyana HOM05D003363 ORTHO05D003952 1.4e-26 122.9 100 59.0
SalBow5G5562 Salvia bowleyana HOM05D003363 ORTHO05D003952 1.4e-26 122.9 100 59.0
PGR044G0111 Punica granatum HOM05D003363 ORTHO05D003952 1.9e-26 122.5 100 58.0
Solyc03g111370.3 Solanum lycopersicum HOM05D003363 ORTHO05D003952 2.4e-26 122.1 101 59.4
CANSAT80G1098 Cannabis sativa HOM05D003363 ORTHO05D003952 3.2e-26 121.7 99 58.6
Ciclev10020738m.g Citrus clementina HOM05D003363 ORTHO05D003952 3.2e-26 121.7 100 58.0
Gohir.D07G058100 Gossypium hirsutum HOM05D003363 ORTHO05D003952 4.2e-26 121.3 100 59.0
Gorai.003G153400 Gossypium raimondii HOM05D003363 ORTHO05D003952 4.2e-26 121.3 100 59.0
ClCG06G017640 Citrullus lanatus HOM05D003363 ORTHO05D003952 5.4e-26 120.9 94 61.7
Manes.14G055400 Manihot esculenta HOM05D003363 ORTHO05D003952 5.4e-26 120.9 100 59.0
Sopen03g030500 Solanum pennellii HOM05D003363 ORTHO05D003952 7.1e-26 120.6 100 59.0
TWI14G0407 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 9.3e-26 120.2 100 56.0
EL10Ac7g18071 Beta vulgaris HOM05D003363 ORTHO05D003952 1.2e-25 119.8 100 59.0
ECA247G0476 Erigeron canadensis HOM05D003363 ORTHO05D003952 1.2e-25 119.8 99 57.6
Gohir.A07G053700 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.2e-25 119.8 100 58.0
Atru.chr9.1007 Acer truncatum HOM05D003363 ORTHO05D003952 2.7e-25 118.6 100 59.0
CDE09G1349 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 2.7e-25 118.6 97 59.8
MELO3C026232.2 Cucumis melo HOM05D003363 ORTHO05D003952 2.7e-25 118.6 94 60.6
CsaV3_1G000800 Cucumis sativus L. HOM05D003363 ORTHO05D003952 2.7e-25 118.6 94 60.6
AUR62018229 Chenopodium quinoa HOM05D003363 ORTHO05D003952 3.5e-25 118.2 96 58.3
FvH4_5g07330 Fragaria vesca HOM05D003363 ORTHO05D003952 3.5e-25 118.2 100 58.0
TWI39G1178 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 3.5e-25 118.2 99 55.6
Nitab4.5_0003282g0080 Nicotiana tabacum HOM05D003363 ORTHO05D003952 4.6e-25 117.9 96 60.4
Nitab4.5_0004750g0030 Nicotiana tabacum HOM05D003363 ORTHO05D003952 4.6e-25 117.9 96 61.5
Oeu045481.1 Olea europaea HOM05D003363 ORTHO05D003952 4.6e-25 117.9 101 54.5
THA.LOC104821504 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 4.6e-25 117.9 101 54.5
Potri.015G090300 Populus trichocarpa HOM05D003363 ORTHO05D003952 6.0e-25 117.5 100 54.0
Actinidia37253 Actinidia chinensis HOM05D003363 ORTHO05D003952 1.0e-24 116.7 97 59.8
Dinv38473 Davidia involucrata HOM05D003363 ORTHO05D003952 1.0e-24 116.7 97 55.7
Eucgr.K02758 Eucalyptus grandis HOM05D003363 ORTHO05D003952 1.0e-24 116.7 99 58.6
GSVIVG01007546001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.0e-24 116.7 101 55.4
HanXRQChr04g0100731 Helianthus annuus HOM05D003363 ORTHO05D003952 1.3e-24 116.3 94 58.5
Nn4g22463 Nelumbo nucifera HOM05D003363 ORTHO05D003952 1.3e-24 116.3 101 56.4
AL8G40360 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 1.7e-24 115.9 101 54.5
BraA02t09192Z Brassica rapa HOM05D003363 ORTHO05D003952 1.7e-24 115.9 101 54.5
Cc04_g10450 Coffea canephora HOM05D003363 ORTHO05D003952 1.7e-24 115.9 100 55.0
SGA_v2.0_scaffold161G37857 Striga asiatica HOM05D003363 ORTHO05D003952 1.7e-24 115.9 101 51.5
Aqoxy5G03585 Aquilegia oxysepala HOM05D003363 ORTHO05D003952 2.3e-24 115.5 100 58.0
BcaB07g29680 Brassica carinata HOM05D003363 ORTHO05D003952 2.3e-24 115.5 98 56.1
Ah.15g095330 Amaranthus hybridus HOM05D003363 ORTHO05D003952 3.0e-24 115.2 100 56.0
BcaC03g18190 Brassica carinata HOM05D003363 ORTHO05D003952 3.0e-24 115.2 101 54.5
BcaC03g18192 Brassica carinata HOM05D003363 ORTHO05D003952 3.0e-24 115.2 101 54.5
Sed0017360 Sechium edule HOM05D003363 ORTHO05D003952 3.0e-24 115.2 94 58.5
ATR0723G044 Amborella trichopoda HOM05D003363 ORTHO05D003952 3.9e-24 114.8 98 54.1
A02p42640 Brassica napus HOM05D003363 ORTHO05D003952 3.9e-24 114.8 101 54.5
C02p62550 Brassica napus HOM05D003363 ORTHO05D003952 3.9e-24 114.8 101 54.5
BolC2t12314H Brassica oleracea HOM05D003363 ORTHO05D003952 3.9e-24 114.8 101 54.5
Eucgr.J02278 Eucalyptus grandis HOM05D003363 ORTHO05D003952 3.9e-24 114.8 100 52.0
Peaxi162Scf00089g00637 Petunia axillaris HOM05D003363 ORTHO05D003952 3.9e-24 114.8 102 56.9
Sp2g26400 Schrenkiella parvula HOM05D003363 ORTHO05D003952 3.9e-24 114.8 98 55.1
RcHm_v2.0_Chr7g0191231 Rosa chinensis HOM05D003363 ORTHO05D003952 5.1e-24 114.4 101 55.4
Carub.0008s2403 Capsella rubella HOM05D003363 ORTHO05D003952 6.6e-24 114.0 101 53.5
Lj6g0014345 Lotus japonicus HOM05D003363 ORTHO05D003952 6.6e-24 114.0 100 52.0
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 6.6e-24 114.0 100 56.0
Atru.chr6.2474 Acer truncatum HOM05D003363 ORTHO05D003952 8.7e-24 113.6 94 59.6
Thhalv10004713m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 8.7e-24 113.6 101 53.5
CiPaw.04G032500 Carya illinoinensis HOM05D003363 ORTHO05D003952 1.1e-23 113.2 100 54.0
Sc03g0006920 Simmondsia chinensis HOM05D003363 ORTHO05D003952 1.1e-23 113.2 100 55.0
CARHR277130 Cardamine hirsuta HOM05D003363 ORTHO05D003952 1.5e-23 112.8 101 53.5
Gohir.A05G342200 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.5e-23 112.8 101 52.5
Sc03g0006980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 1.5e-23 112.8 100 55.0
MBI11_g36296_MAGBIO Magnolia biondii HOM05D003363 ORTHO05D003952 1.9e-23 112.5 96 58.3
Hund05644 Selenicereus undatus HOM05D003363 ORTHO05D003952 1.9e-23 112.5 97 55.7
Medtr3g052770 Medicago truncatula HOM05D003363 ORTHO05D003952 2.5e-23 112.1 100 49.0
AT5G63280 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 3.3e-23 111.7 101 53.5
HPP92_021371 Vanilla planifolia HOM05D003363 ORTHO05D003952 3.3e-23 111.7 97 56.7
Actinidia36786 Actinidia chinensis HOM05D003363 ORTHO05D003952 4.3e-23 111.3 97 56.7
MSTRG.11295 Avicennia marina HOM05D003363 ORTHO05D003952 4.3e-23 111.3 100 51.0
DCAR_007468 Daucus carota HOM05D003363 ORTHO05D003952 4.3e-23 111.3 99 52.5
Gorai.012G090700 Gossypium raimondii HOM05D003363 ORTHO05D003952 4.3e-23 111.3 101 52.5
Gohir.D04G080400 Gossypium hirsutum HOM05D003363 ORTHO05D003952 7.3e-23 110.5 101 52.5
PSO063G7397 Papaver somniferum HOM05D003363 ORTHO05D003952 7.3e-23 110.5 102 53.9
Hma1.2p1_0046F.1_g027570 Hydrangea macrophylla HOM05D003363 ORTHO05D003952 9.6e-23 110.2 94 54.3
Os12g0233400 Oryza sativa ssp. japonica HOM05D003363 ORTHO05D003952 9.6e-23 110.2 100 54.0
TAR371G0872 Trochodendron aralioides HOM05D003363 ORTHO05D003952 9.6e-23 110.2 125 48.0
Actinidia16193 Actinidia chinensis HOM05D003363 ORTHO05D003952 1.3e-22 109.8 97 55.7
Ciclev10016239m.g Citrus clementina HOM05D003363 ORTHO05D003952 1.3e-22 109.8 94 55.3
Cpa.g.sc130.47 Carica papaya HOM05D003363 ORTHO05D003952 1.6e-22 109.4 100 53.0
MD06G1157300 Malus domestica HOM05D003363 ORTHO05D003952 2.1e-22 109.0 98 56.1
PSO782G5587 Papaver somniferum HOM05D003363 ORTHO05D003952 2.1e-22 109.0 102 52.9
Rhsim08G0184900 Rhododendron simsii HOM05D003363 ORTHO05D003952 2.1e-22 109.0 97 55.7
COL.COLO4_29261 Corchorus olitorius HOM05D003363 ORTHO05D003952 2.8e-22 108.6 100 52.0
Thecc.04G025900 Theobroma cacao HOM05D003363 ORTHO05D003952 2.8e-22 108.6 100 50.0
TWI56G0847 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 2.8e-22 108.6 100 52.0
Ca_14750_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 4.8e-22 107.8 100 49.0
Haze_14805 Corylus avellana HOM05D003363 ORTHO05D003952 4.8e-22 107.8 100 52.0
FAN04G1323 Fragaria x ananassa HOM05D003363 ORTHO05D003952 6.2e-22 107.5 88 60.2
MD14G1163900 Malus domestica HOM05D003363 ORTHO05D003952 6.2e-22 107.5 96 56.2
Migut.I00466 Erythranthe guttata HOM05D003363 ORTHO05D003952 8.1e-22 107.1 109 50.5
Psat5g174720 Pisum sativum HOM05D003363 ORTHO05D003952 8.1e-22 107.1 100 49.0
THA.LOC104825306 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 8.1e-22 107.1 98 55.1
Aa31LG1G18720 Aethionema arabicum HOM05D003363 ORTHO05D003952 1.1e-21 106.7 101 48.5
CSS0047112 Camellia sinensis var. sinensis HOM05D003363 ORTHO05D003952 1.1e-21 106.7 85 60.0
Cfa007288 Carpinus fangiana HOM05D003363 ORTHO05D003952 1.1e-21 106.7 94 54.3
vmacro19240 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 1.4e-21 106.3 97 54.6
CANSAT64G0613 Cannabis sativa HOM05D003363 ORTHO05D003952 4.0e-21 104.8 95 50.5
TPR.G33745 Trifolium pratense HOM05D003363 ORTHO05D003952 4.0e-21 104.8 99 49.5
arahy.Tifrunner.gnm1.ann1.AN2TAK Arachis hypogaea HOM05D003363 ORTHO05D003952 6.9e-21 104.0 100 48.0
QL02p073211 Quercus lobata HOM05D003363 ORTHO05D003952 6.9e-21 104.0 100 50.0
PGR083G1927 Punica granatum HOM05D003363 ORTHO05D003952 1.5e-20 102.8 101 49.5
ClCG05G013160 Citrullus lanatus HOM05D003363 ORTHO05D003952 2.6e-20 102.1 97 49.5
Manes.15G155700 Manihot esculenta HOM05D003363 ORTHO05D003952 2.6e-20 102.1 100 50.0
Sed0001198 Sechium edule HOM05D003363 ORTHO05D003952 2.6e-20 102.1 101 49.5
Sabra15G0112500 Salix brachista HOM05D003363 ORTHO05D003952 5.8e-20 100.9 83 56.6
arahy.Tifrunner.gnm1.ann1.A6IT6I Arachis hypogaea HOM05D000084 ORTHO05D003952 9.9e-20 100.1 64 79.7
Glyma.18G094500 Glycine max HOM05D003363 ORTHO05D003952 3.8e-19 98.2 73 58.9
Sed0026914 Sechium edule HOM05D003363 ORTHO05D003952 4.9e-19 97.8 101 46.5
MELO3C014840.2 Cucumis melo HOM05D003363 ORTHO05D003952 8.4e-19 97.1 97 47.4
Glyma.08G319000 Glycine max HOM05D003363 ORTHO05D003952 1.1e-18 96.7 80 53.8
CsaV3_3G027390 Cucumis sativus L. HOM05D003363 ORTHO05D003952 2.4e-18 95.5 97 47.4
Lalb_Chr15g0081431 Lupinus albus HOM05D003363 ORTHO05D003952 3.2e-18 95.1 81 54.3
Sc04g0000980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 3.2e-18 95.1 67 67.2
CARHR213800 Cardamine hirsuta HOM05D003363 ORTHO05D003952 4.2e-18 94.7 95 50.5
FAN18G1106 Fragaria x ananassa HOM05D003363 ORTHO05D003952 4.2e-18 94.7 87 55.2
Duzib264G0961 Durio zibethinus HOM05D003363 ORTHO05D003952 5.4e-18 94.4 100 46.0
VMungo0540G0103 Vigna mungo HOM05D003363 ORTHO05D003952 5.4e-18 94.4 73 58.9
PGSC0003DMG400015181 Solanum tuberosum HOM05D003363 ORTHO05D003952 9.3e-18 93.6 67 65.7
AL7G49030 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 1.2e-17 93.2 100 46.0
BcaC03g18189 Brassica carinata HOM05D003363 ORTHO05D003952 1.2e-17 93.2 90 53.3
Aa31LG9G930 Aethionema arabicum HOM05D003363 ORTHO05D003952 1.6e-17 92.8 95 53.7
Cpa.g.sc4.69 Carica papaya HOM05D003363 ORTHO05D003952 2.1e-17 92.4 70 62.9
Phvul.006G046100 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 7.9e-17 90.5 74 56.8
FAN08G1495 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.0e-16 90.1 84 57.1
vmacro16707 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 1.3e-16 89.7 66 63.6
RcHm_v2.0_Chr2g0174061 Rosa chinensis HOM05D003363 ORTHO05D003952 3.0e-16 88.6 61 62.3
MD09G1018200 Malus domestica HOM05D003363 ORTHO05D003952 3.9e-16 88.2 59 64.4
FvH4_6g52420 Fragaria vesca HOM05D003363 ORTHO05D003952 5.1e-16 87.8 59 64.4
FAN05G1134 Fragaria x ananassa HOM05D003363 ORTHO05D003952 5.1e-16 87.8 59 64.4
FAN14G1266 Fragaria x ananassa HOM05D003363 ORTHO05D003952 5.1e-16 87.8 59 64.4
FAN02G0219 Fragaria x ananassa HOM05D003363 ORTHO05D003952 6.7e-16 87.4 59 64.4
Prupe.3G298900 Prunus persica HOM05D003363 ORTHO05D003952 8.7e-16 87.0 64 60.9
Potri.001G336500 Populus trichocarpa HOM05D003363 ORTHO05D003952 1.1e-15 86.7 65 60.0
Sabra16G0217300 Salix brachista HOM05D003363 ORTHO05D003952 1.1e-15 86.7 61 63.9
CDE02G1324 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 3.3e-15 85.1 75 57.3
arahy.Tifrunner.gnm1.ann1.EV1HEV Arachis hypogaea HOM05D003363 ORTHO05D003952 5.6e-15 84.3 64 59.4
QL02p073044 Quercus lobata HOM05D003363 ORTHO05D003952 9.6e-15 83.6 65 60.0
QL02p073113 Quercus lobata HOM05D003363 ORTHO05D003952 9.6e-15 83.6 65 60.0
Thhalv10027883m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 1.3e-14 83.2 95 46.3
arahy.Tifrunner.gnm1.ann1.THGE5Z Arachis hypogaea HOM05D003363 ORTHO05D003952 1.6e-14 82.8 106 41.5
Manes.06G115000 Manihot esculenta HOM05D003363 ORTHO05D003952 2.8e-14 82.0 67 59.7
AT5G40710 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 3.7e-14 81.6 94 43.6
Mapoly0016s0064 Marchantia polymorpha HOM05D003363 ORTHO05D003952 4.5e-12 74.7 96 39.6
arahy.Tifrunner.gnm1.ann1.PLK8LK Arachis hypogaea HOM05D003363 ORTHO05D003952 1.3e-11 73.2 79 46.8
Haze_07278 Corylus avellana HOM05D003363 ORTHO05D003952 1.7e-11 72.8 45 71.1
MD06G1153500 Malus domestica HOM05D003363 ORTHO05D003952 8.4e-11 70.5 96 41.7
AUR62025731 Chenopodium quinoa HOM05D003363 ORTHO05D003952 2.1e-09 65.9 43 67.4
TAR622G0704 Trochodendron aralioides HOM05D003363 ORTHO05D003952 2.7e-09 65.5 43 62.8
AUR62001275 Chenopodium quinoa HOM05D003363 ORTHO05D003952 3.5e-09 65.1 43 67.4
arahy.Tifrunner.gnm1.ann1.Z8QTTL Arachis hypogaea HOM05D003363 ORTHO05D003952 6.0e-09 64.3 43 62.8
Lj5C100T14 Lonicera japonica HOM05D003363 ORTHO05D003952 6.0e-09 64.3 42 61.9
arahy.Tifrunner.gnm1.ann1.Z9T13B Arachis hypogaea HOM05D003363 ORTHO05D031544 2.3e-08 62.4 42 61.9
Rhsim12G0171900 Rhododendron simsii HOM05D003363 ORTHO05D003952 6.7e-08 60.8 44 56.8
Dinv11107 Davidia involucrata HOM05D003363 ORTHO05D003952 7.4e-07 57.4 41 58.5


User provided reference genes

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