Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 6.5e-96 354.0 171 100.0
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.8e-53 213.0 167 66.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.2e-43 179.5 117 76.1
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 4.4e-36 155.2 176 53.4
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 9.9e-36 154.1 170 52.9
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 9.3e-34 147.5 194 47.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 6.6e-32 141.4 183 48.1
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.6e-30 135.6 179 48.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.1e-29 134.0 118 63.6
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-29 134.0 162 47.5
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.8e-29 133.3 156 48.7
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.0e-29 132.1 153 53.6
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 5.8e-28 128.3 141 48.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 5.8e-28 128.3 163 49.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.8e-28 128.3 147 49.0
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.8e-28 128.3 177 44.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 7.6e-28 127.9 163 49.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 9.9e-28 127.5 151 46.4
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-27 127.1 117 56.4
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-27 127.1 116 57.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.7e-27 126.7 161 45.3
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.9e-27 125.9 176 46.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.8e-27 125.6 175 45.1
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.9e-27 125.2 165 47.3
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 6.4e-27 124.8 141 50.4
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.4e-27 124.8 128 51.6
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.1e-26 124.0 157 45.2
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.1e-26 124.0 157 45.2
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.2e-26 122.5 131 49.6
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.2e-26 122.5 114 57.0
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 4.2e-26 122.1 141 51.1
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.2e-26 122.1 158 48.1
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.4e-26 121.7 148 51.4
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 5.4e-26 121.7 131 50.4
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.4e-26 121.7 141 51.1
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 7.1e-26 121.3 158 47.5
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 7.1e-26 121.3 145 49.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 9.3e-26 120.9 141 47.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 9.3e-26 120.9 141 47.5
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.3e-26 120.9 115 56.5
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-25 120.6 141 47.5
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.6e-25 120.2 157 46.5
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.6e-25 118.6 138 47.1
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 4.6e-25 118.6 117 53.8
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.0e-25 118.2 132 50.0
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 7.9e-25 117.9 135 50.4
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.9e-25 117.9 152 46.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.0e-24 117.5 117 53.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-24 117.5 157 49.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.0e-24 117.5 136 50.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.3e-24 117.1 150 46.7
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-24 117.1 155 45.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.3e-24 116.3 132 50.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.3e-24 116.3 183 43.2
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.0e-24 115.9 128 51.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 3.0e-24 115.9 156 42.9
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.9e-24 115.5 145 46.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.9e-24 115.5 137 49.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 3.9e-24 115.5 133 51.9
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 8.7e-24 114.4 113 53.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.5e-23 112.8 137 48.9
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.5e-23 112.8 130 51.5
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.5e-23 112.8 140 48.6
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.5e-23 112.8 160 43.1
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 4.3e-23 112.1 133 49.6
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 9.6e-23 110.9 117 53.8
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 9.6e-23 110.9 115 51.3
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.3e-22 110.5 117 48.7
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.1e-21 107.5 115 51.3
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.8e-21 106.7 157 44.6
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.1e-21 105.9 193 36.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.0e-21 104.4 129 48.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-20 104.0 108 54.6
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-20 104.0 130 47.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-20 104.0 130 47.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.5e-20 103.6 66 71.2
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-20 103.6 66 71.2
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 2.0e-20 103.2 168 41.1
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 7.6e-20 101.3 117 49.6
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-19 100.9 108 51.9
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.2e-19 99.8 118 50.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.2e-19 99.8 108 52.8
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.9e-19 99.4 119 42.9
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-19 99.4 112 52.7
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.9e-19 99.4 112 52.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.8e-19 99.0 153 42.5
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.8e-19 99.0 61 73.8
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.8e-19 99.0 61 73.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.5e-19 98.2 125 50.4
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 8.4e-19 97.8 110 47.3
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 8.4e-19 97.8 162 38.9
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.1e-18 94.7 108 50.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 9.3e-18 94.4 113 48.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.6e-17 93.6 160 42.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.1e-17 93.2 113 46.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.1e-17 93.2 114 47.4
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 4.6e-17 92.0 91 49.5
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-16 90.5 120 45.0
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.3e-16 89.7 119 44.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.3e-16 89.7 107 50.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.3e-16 89.7 113 47.8
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.0e-16 89.4 119 44.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.9e-15 86.7 84 52.4
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.5e-15 86.3 110 46.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.3e-15 85.9 124 41.1
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 3.3e-15 85.9 101 47.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 5.7e-15 85.1 89 48.3
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.4e-15 84.7 156 35.3
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 7.4e-15 84.7 165 37.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.6e-15 84.3 118 41.5
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.6e-15 84.3 118 41.5
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 9.6e-15 84.3 124 40.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 9.6e-15 84.3 105 41.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.6e-14 83.6 111 45.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.1e-14 83.2 73 54.8
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 2.8e-14 82.8 132 40.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.7e-14 82.4 125 41.6
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 4.8e-14 82.0 124 41.1
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.2e-14 81.6 116 43.1
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.2e-14 81.6 116 42.2
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 8.2e-14 81.3 156 37.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-13 80.9 116 42.2
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.4e-13 80.5 134 39.6
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 1.8e-13 80.1 164 40.2
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-13 80.1 110 41.8
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.4e-13 79.7 116 41.4
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.4e-13 79.7 48 75.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 9.0e-13 77.8 87 48.3
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 9.0e-13 77.8 87 48.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.6e-12 76.3 122 41.0
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 3.4e-12 75.9 87 48.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.5e-12 75.5 116 37.1
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.7e-11 73.6 88 46.6
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.9e-11 72.8 50 64.0
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.1e-10 70.9 105 37.1
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.9e-10 70.1 93 45.2
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.6e-09 67.0 158 34.2
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 6.1e-09 65.1 114 41.2
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 6.1e-09 65.1 81 44.4
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 7.9e-09 64.7 98 41.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.3e-08 63.9 156 30.8
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.3e-08 63.9 157 33.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.3e-08 63.9 162 32.7
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 5.1e-08 62.0 118 38.1
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 6.7e-08 61.6 75 44.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 8.7e-08 61.2 61 50.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 8.7e-08 61.2 61 50.8
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 8.7e-08 61.2 62 48.4
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.7e-07 58.5 160 33.8
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 5.7e-07 58.5 41 61.0
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 7.4e-07 58.2 44 59.1
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 9.7e-07 57.8 117 34.2
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.8e-06 55.5 120 33.3


User provided reference genes

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