Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 1.5e-37 159.1 85 100.0
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 2.5e-32 141.7 84 89.3
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 3.8e-28 127.9 81 80.2
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 2.1e-26 122.1 83 75.9
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 1.6e-23 112.5 79 72.2
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 2.4e-22 108.6 83 67.5
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 3.1e-22 108.2 83 67.5
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 4.5e-21 104.4 79 65.8
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 5.8e-21 104.0 81 69.1
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 1.7e-20 102.4 78 62.8
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 4.9e-20 100.9 78 64.1
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 8.4e-20 100.1 78 64.1
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 1.1e-19 99.8 79 64.6
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 1.9e-19 99.0 78 61.5
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 2.5e-19 98.6 80 65.0
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 7.1e-19 97.1 77 63.6
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.2e-18 96.3 80 63.8
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.2e-18 96.3 80 63.8
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 1.6e-18 95.9 78 61.5
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 2.1e-18 95.5 81 64.2
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 2.7e-18 95.1 77 62.3
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 3.5e-18 94.7 80 65.0
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 3.5e-18 94.7 74 66.2
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 4.6e-18 94.4 78 62.8
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 6.0e-18 94.0 52 86.5
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 7.9e-18 93.6 78 62.8
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 7.9e-18 93.6 80 61.2
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.8e-17 92.4 76 60.5
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 6.7e-17 90.5 77 58.4
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 1.5e-16 89.4 76 57.9
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 1.9e-16 89.0 82 56.1
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 1.9e-16 89.0 79 59.5
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 5.7e-16 87.4 66 66.7
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 5.7e-16 87.4 87 57.5
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 7.4e-16 87.0 74 58.1
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 9.7e-16 86.7 72 65.3
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.3e-15 86.3 77 58.4
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 1.3e-15 86.3 83 54.2
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 1.6e-15 85.9 73 58.9
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 2.2e-15 85.5 82 56.1
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 3.7e-15 84.7 74 59.5
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 8.2e-15 83.6 79 51.9
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 1.1e-14 83.2 81 55.6
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.1e-14 83.2 73 58.9
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 1.4e-14 82.8 71 63.4
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 1.8e-14 82.4 77 55.8
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.4e-14 82.0 78 59.0
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 3.1e-14 81.6 76 57.9
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 5.3e-14 80.9 71 60.6
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 9.0e-14 80.1 76 55.3
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 9.0e-14 80.1 65 61.5
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 9.0e-14 80.1 65 61.5
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.2e-13 79.7 83 56.6
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 1.2e-13 79.7 67 62.7
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 2.6e-13 78.6 82 50.0
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 2.6e-13 78.6 82 52.4
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 5.9e-13 77.4 76 52.6
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 2.2e-12 75.5 76 55.3
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 1.4e-11 72.8 69 56.5
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.9e-11 72.4 65 56.9
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 3.2e-11 71.6 69 55.1
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 4.2e-11 71.2 69 55.1
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 5.5e-11 70.9 67 58.2
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 2.7e-10 68.6 53 66.0
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.8e-09 65.9 64 54.7
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.8e-09 65.9 64 54.7
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 3.9e-09 64.7 65 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 8.8e-09 63.5 61 54.1
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 1.1e-08 63.2 50 58.0
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 1.1e-08 63.2 65 56.9
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 6.3e-07 57.4 70 50.0
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 3.1e-06 55.1 49 55.1


User provided reference genes

Program Settings