Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 6.9e-154 547.4 294 100.0
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 3.1e-122 442.2 322 77.3
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.3e-120 436.8 323 77.4
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.7e-120 436.4 322 78.0
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.3e-112 410.2 321 71.3
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 5.5e-111 404.8 320 70.6
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.1e-110 402.9 320 68.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.8e-109 399.8 320 68.4
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 4.4e-108 395.2 320 67.8
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 3.7e-107 392.1 322 70.2
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.0e-101 374.0 320 64.7
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 4.4e-100 368.6 320 63.8
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.1e-94 349.7 305 62.0
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.0e-92 343.2 321 63.9
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 3.4e-92 342.4 321 64.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.9e-90 336.7 307 64.8
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 2.8e-86 322.8 297 63.6
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 3.6e-86 322.4 266 66.9
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.4e-85 320.5 274 67.2
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.4e-85 320.5 274 67.9
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 4.0e-85 318.9 231 77.9
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.2e-84 317.4 268 66.4
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 9.8e-84 314.3 320 62.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.7e-83 312.4 266 68.0
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.9e-83 312.0 320 61.2
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-83 312.0 267 67.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.9e-83 312.0 279 62.4
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.1e-82 310.8 320 56.2
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 4.1e-82 308.9 269 62.8
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 2.1e-81 306.6 327 54.4
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.7e-81 306.2 251 66.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.0e-80 304.3 294 58.2
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.3e-80 303.9 272 62.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.3e-80 303.1 294 59.5
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.0e-80 302.8 297 58.2
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 3.0e-80 302.8 322 55.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.9e-80 302.4 294 59.5
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.1e-80 302.0 268 65.7
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 5.1e-80 302.0 316 59.2
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 5.1e-80 302.0 316 59.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.1e-80 302.0 268 66.8
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 8.6e-80 301.2 271 60.9
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.1e-79 300.8 268 62.3
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.5e-79 300.4 316 58.9
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.5e-79 300.4 272 65.4
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.9e-79 300.1 272 65.1
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.9e-79 300.1 271 64.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 2.5e-79 299.7 242 66.9
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 3.3e-79 299.3 325 57.2
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.6e-78 297.0 325 58.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.1e-78 296.6 264 62.1
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 3.6e-78 295.8 272 62.5
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.6e-78 295.8 272 62.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 4.7e-78 295.4 272 63.2
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 6.2e-78 295.0 262 63.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.1e-77 294.3 272 64.3
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.1e-77 292.7 306 57.8
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 4.0e-77 292.4 272 61.0
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 5.2e-77 292.0 303 55.4
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 5.2e-77 292.0 267 64.4
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 5.2e-77 292.0 267 64.0
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.5e-76 290.4 264 62.9
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.6e-76 289.7 324 57.4
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.4e-76 289.3 315 54.3
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 3.4e-76 289.3 320 56.2
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.4e-76 288.9 267 59.6
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 7.6e-76 288.1 269 60.2
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 7.6e-76 288.1 303 58.4
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 9.9e-76 287.7 268 60.4
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 9.9e-76 287.7 287 57.5
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.2e-75 286.6 316 57.0
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.9e-75 286.2 321 55.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.4e-74 283.1 267 61.4
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.4e-74 283.1 268 58.2
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 4.1e-74 282.3 279 57.3
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 5.4e-74 282.0 314 53.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 9.2e-74 281.2 278 58.3
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.6e-73 280.4 264 62.9
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.1e-73 280.0 318 51.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.1e-73 280.0 268 60.8
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.8e-73 278.1 320 55.0
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 3.0e-72 276.2 270 59.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.3e-71 272.3 267 58.1
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 5.6e-71 271.9 299 52.2
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.1e-69 267.7 268 57.1
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.8e-69 266.9 295 51.9
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 8.9e-69 264.6 283 51.6
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 3.8e-67 259.2 286 53.1
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 3.8e-67 259.2 286 53.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-66 256.9 274 52.6
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 5.4e-66 255.4 234 62.0
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.1e-65 253.4 268 59.7
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.9e-64 249.2 270 54.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 3.9e-64 249.2 292 51.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.1e-63 247.7 272 58.5
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.1e-62 243.4 288 51.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 4.8e-62 242.3 290 50.0
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.4e-61 240.7 282 50.7
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.8e-61 240.4 314 47.8
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 3.5e-57 226.1 258 53.1
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.3e-56 223.4 234 54.7
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-55 219.9 260 47.7
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.6e-54 217.2 215 60.0
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.8e-54 216.5 269 53.2
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 5.3e-53 212.2 240 55.0
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 9.0e-53 211.5 213 54.9
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 5.8e-52 208.8 234 49.6
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-44 183.7 184 56.0
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.3e-43 181.0 114 81.6
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.5e-39 167.5 125 68.8
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.6e-39 164.9 239 50.2
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.6e-38 164.1 218 44.0
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 8.2e-38 161.8 266 43.2
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 2.4e-37 160.2 232 47.0
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 3.8e-35 152.9 153 54.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 6.9e-21 105.5 156 41.7
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.5e-20 104.4 81 66.7
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.0e-19 101.7 145 42.1
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 6.3e-06 55.8 42 59.5


User provided reference genes

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