Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.6e-135 486.1 250 100.0
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.7e-63 245.7 221 61.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 6.2e-63 245.0 221 60.6
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.8e-62 243.4 221 63.3
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 2.7e-50 203.0 213 56.8
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.1e-48 197.6 223 54.3
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 7.4e-48 194.9 217 51.6
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 9.7e-48 194.5 234 48.7
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.6e-47 193.7 217 51.2
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 2.8e-47 193.0 212 50.5
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 8.2e-47 191.4 240 49.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.8e-46 190.3 206 53.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 3.1e-46 189.5 206 51.9
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.1e-46 189.1 213 51.6
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 6.9e-46 188.3 203 53.7
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 1.2e-45 187.6 207 52.7
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.6e-45 186.4 214 50.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 4.5e-45 185.7 214 49.1
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 5.9e-45 185.3 219 49.8
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.0e-44 184.5 212 50.0
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.7e-44 183.7 216 47.7
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.7e-44 183.7 216 47.7
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.2e-44 183.3 214 51.4
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.9e-44 183.0 209 49.8
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 2.9e-44 183.0 214 47.2
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.8e-44 182.6 208 51.9
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.8e-44 182.6 216 47.7
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 6.5e-44 181.8 206 51.5
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 1.9e-43 180.3 206 52.4
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 2.5e-43 179.9 223 48.9
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 3.2e-43 179.5 197 52.8
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 5.5e-43 178.7 210 48.6
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 5.5e-43 178.7 206 50.0
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.2e-42 177.6 214 50.5
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.2e-42 177.6 214 50.5
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 1.2e-42 177.6 206 49.5
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.1e-42 176.8 209 48.8
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 2.1e-42 176.8 214 47.7
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 7.9e-42 174.9 230 45.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 7.9e-42 174.9 208 48.6
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.0e-41 174.5 238 46.6
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.4e-41 174.1 225 45.8
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 1.4e-41 174.1 220 48.2
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.8e-41 173.7 241 45.2
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.0e-41 172.9 225 45.8
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 3.9e-41 172.6 214 48.6
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 5.1e-41 172.2 191 54.5
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 5.1e-41 172.2 209 47.4
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 5.1e-41 172.2 206 46.1
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.5e-40 170.6 224 45.5
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.5e-40 170.6 213 46.5
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 5.7e-40 168.7 199 47.7
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 7.4e-40 168.3 205 45.4
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.3e-39 167.5 242 43.0
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.2e-39 166.8 218 43.6
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.8e-39 166.4 213 46.0
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.8e-39 166.4 218 43.6
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 3.7e-39 166.0 209 44.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 3.7e-39 166.0 219 45.2
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 6.3e-39 165.2 224 44.6
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 6.3e-39 165.2 223 46.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.1e-38 164.5 252 42.1
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.1e-38 164.5 254 45.3
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.1e-38 164.5 206 45.1
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.4e-38 164.1 216 46.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.4e-38 163.3 204 44.6
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.2e-37 161.0 202 48.5
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 2.6e-37 159.8 203 45.8
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 2.6e-37 159.8 222 44.1
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.4e-37 159.5 108 71.3
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 3.4e-37 159.5 203 47.3
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 7.7e-37 158.3 204 46.6
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.5e-36 154.8 216 42.6
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 8.5e-36 154.8 238 39.9
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.1e-35 154.5 212 42.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.9e-35 153.7 204 44.1
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 2.5e-35 153.3 219 42.5
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 2.5e-35 153.3 233 45.1
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 3.2e-35 152.9 204 43.1
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 5.5e-35 152.1 204 44.1
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 5.5e-35 152.1 220 43.6
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 9.4e-35 151.4 101 72.3
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.2e-34 151.0 220 43.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.6e-34 150.6 203 43.8
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.6e-34 150.6 203 43.8
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 4.7e-34 149.1 211 42.7
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 5.2e-33 145.6 185 47.0
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 6.7e-33 145.2 252 38.5
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.2e-31 140.2 215 43.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 8.2e-31 138.3 227 39.6
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.8e-30 137.1 190 42.1
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 9.1e-30 134.8 207 43.0
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 5.9e-29 132.1 211 38.9
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 2.1e-26 123.6 173 42.2
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 1.2e-24 117.9 143 50.3
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 2.5e-19 100.1 181 39.8
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 2.1e-18 97.1 109 45.0
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.8e-17 94.0 74 64.9
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 4.0e-17 92.8 74 64.9
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.5e-16 90.9 72 61.1
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 4.4e-16 89.4 209 34.0
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 4.8e-15 85.9 130 41.5
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 1.6e-13 80.9 113 44.2
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 4.5e-13 79.3 55 74.5
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 5.9e-13 79.0 134 35.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 8.0e-10 68.6 134 35.8
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.8e-09 67.4 50 62.0
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.0e-08 63.9 111 35.1
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 9.8e-08 61.6 173 29.5
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.3e-07 61.2 137 29.2
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.8e-07 60.1 133 30.1
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.8e-07 60.1 133 30.8
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 2.8e-07 60.1 133 30.8
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 3.7e-07 59.7 133 30.8
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 3.7e-07 59.7 133 30.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 3.7e-07 59.7 169 30.8
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 6.3e-07 58.9 111 34.2
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 8.3e-07 58.5 186 31.2
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 8.3e-07 58.5 151 30.5
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 8.3e-07 58.5 137 28.5
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.4e-06 55.8 127 28.3
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 7.0e-06 55.5 104 31.7
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 9.2e-06 55.1 151 30.5


User provided reference genes

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