Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G155300 Glycine max HOM05D000361 ORTHO05D004243 2.6e-172 608.6 304 100.0
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.5e-34 151.0 88 85.2
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 1.6e-33 147.5 88 81.8
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 6.3e-33 145.6 88 79.5
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.4e-32 144.4 88 78.4
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 2.4e-32 143.7 88 78.4
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 2.4e-32 143.7 88 79.5
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 5.3e-32 142.5 90 75.6
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 5.3e-32 142.5 88 78.4
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 5.3e-32 142.5 88 78.4
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 6.9e-32 142.1 88 76.1
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 6.9e-32 142.1 88 78.4
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 6.9e-32 142.1 88 76.1
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 9.0e-32 141.7 88 76.1
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.2e-31 141.4 88 75.0
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.2e-31 141.4 88 77.3
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.2e-31 141.4 88 75.0
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.2e-31 141.4 88 77.3
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.2e-31 141.4 88 75.0
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.0e-31 140.6 88 77.3
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 2.0e-31 140.6 88 75.0
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.4e-31 139.8 88 75.0
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.5e-31 139.4 88 72.7
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 4.5e-31 139.4 90 73.3
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 4.5e-31 139.4 88 76.1
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 4.5e-31 139.4 88 73.9
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 5.9e-31 139.0 88 75.0
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 7.7e-31 138.7 88 72.7
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 7.7e-31 138.7 88 72.7
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 7.7e-31 138.7 88 72.7
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 7.7e-31 138.7 88 72.7
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.0e-30 138.3 88 72.7
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 1.0e-30 138.3 88 73.9
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.0e-30 138.3 88 77.3
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 1.0e-30 138.3 88 77.3
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 1.3e-30 137.9 88 71.6
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 1.3e-30 137.9 88 72.7
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 1.7e-30 137.5 86 74.4
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 1.7e-30 137.5 89 71.9
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.2e-30 137.1 88 75.0
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 2.2e-30 137.1 88 75.0
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 2.2e-30 137.1 88 75.0
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 2.2e-30 137.1 88 72.7
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 2.2e-30 137.1 88 72.7
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 2.9e-30 136.7 88 72.7
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 2.9e-30 136.7 88 73.9
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 3.8e-30 136.3 88 73.9
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 3.8e-30 136.3 88 70.5
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 3.8e-30 136.3 88 73.9
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 3.8e-30 136.3 88 73.9
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 6.5e-30 135.6 88 70.5
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 6.5e-30 135.6 88 71.6
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 6.5e-30 135.6 88 72.7
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 8.5e-30 135.2 88 72.7
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.1e-29 134.8 88 71.6
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.1e-29 134.8 88 71.6
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.1e-29 134.8 88 75.0
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 1.9e-29 134.0 88 70.5
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 1.9e-29 134.0 88 71.6
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 2.5e-29 133.7 88 75.0
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 3.2e-29 133.3 88 73.9
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 3.2e-29 133.3 88 70.5
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 4.2e-29 132.9 88 72.7
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 4.2e-29 132.9 88 72.7
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 4.2e-29 132.9 88 71.6
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.2e-29 132.9 88 70.5
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 5.5e-29 132.5 88 69.3
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 7.2e-29 132.1 87 69.0
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 9.4e-29 131.7 88 69.3
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 9.4e-29 131.7 88 69.3
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 1.2e-28 131.3 88 68.2
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.2e-28 131.3 94 64.9
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 1.2e-28 131.3 88 67.0
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.6e-28 131.0 88 69.3
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 2.1e-28 130.6 88 70.5
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 2.7e-28 130.2 87 69.0
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 2.7e-28 130.2 88 69.3
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 2.7e-28 130.2 88 69.3
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 3.6e-28 129.8 88 70.5
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 3.6e-28 129.8 86 70.9
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 3.6e-28 129.8 88 69.3
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 4.6e-28 129.4 88 68.2
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 4.6e-28 129.4 88 68.2
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 6.1e-28 129.0 88 68.2
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 6.1e-28 129.0 88 68.2
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 7.9e-28 128.6 86 69.8
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 1.0e-27 128.3 88 68.2
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.8e-27 127.5 88 68.2
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 1.8e-27 127.5 88 67.0
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 2.3e-27 127.1 88 68.2
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 3.0e-27 126.7 88 68.2
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 3.0e-27 126.7 88 68.2
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 3.0e-27 126.7 88 67.0
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 3.0e-27 126.7 88 68.2
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 3.9e-27 126.3 88 68.2
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 5.1e-27 125.9 88 68.2
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 5.1e-27 125.9 88 69.3
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 8.8e-27 125.2 88 67.0
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 8.8e-27 125.2 88 67.0
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 1.5e-26 124.4 87 67.8
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 1.5e-26 124.4 87 67.8
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 1.5e-26 124.4 87 67.8
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 1.5e-26 124.4 87 67.8
arahy.Tifrunner.gnm1.ann1.3FW809 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.0e-26 124.0 86 68.6
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.0e-26 124.0 88 65.9
arahy.Tifrunner.gnm1.ann1.Z1FAFN Arachis hypogaea HOM05D000361 ORTHO05D004243 2.5e-26 123.6 121 54.5
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 3.3e-26 123.2 86 68.6
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 3.3e-26 123.2 88 65.9
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 5.7e-26 122.5 88 64.8
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 5.7e-26 122.5 88 64.8
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 5.7e-26 122.5 88 65.9
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 7.4e-26 122.1 88 65.9
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 7.4e-26 122.1 88 63.6
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.7e-25 120.9 88 65.9
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 2.8e-25 120.2 94 61.7
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 3.7e-25 119.8 88 62.5
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 4.8e-25 119.4 108 57.4
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 6.3e-25 119.0 88 64.8
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 6.3e-25 119.0 167 43.1
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 1.4e-24 117.9 80 68.8
SEGI_20894 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 2.6e-23 113.6 88 56.8
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 4.5e-23 112.8 88 61.4
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 4.5e-23 112.8 88 61.4
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 4.5e-23 112.8 153 43.8
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 3.6e-20 103.2 146 41.1
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 6.7e-19 99.0 59 71.2
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.0e-18 97.4 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 2.6e-18 97.1 89 43.8
arahy.Tifrunner.gnm1.ann1.1JN5P4 Arachis hypogaea HOM05D000361 ORTHO05D004243 3.3e-18 96.7 60 73.3
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 4.4e-18 96.3 88 50.0
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 4.4e-18 96.3 88 50.0
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 2.0e-15 87.4 90 44.4
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.3e-14 84.7 88 53.4
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 6.5e-14 82.4 88 42.0
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 2.5e-13 80.5 84 44.0
Oeu049910.1 Olea europaea HOM05D000361 ORTHO05D004243 1.2e-12 78.2 58 60.3
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 2.3e-11 73.9 88 36.4
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 6.7e-11 72.4 50 60.0
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 8.8e-11 72.0 52 59.6
arahy.Tifrunner.gnm1.ann1.99VT9P Arachis hypogaea HOM05D000361 ORTHO05D004243 1.1e-10 71.6 86 48.8
Glyma.18G028700 Glycine max HOM05D001930 ORTHO05D001345 1.7e-09 67.8 62 61.3
Glyma.11G228400 Glycine max HOM05D001930 ORTHO05D001345 1.8e-08 64.3 43 79.1
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 2.4e-08 63.9 41 80.5
Cfa001331 Carpinus fangiana HOM05D001930 ORTHO05D001345 4.1e-08 63.2 52 63.5
Phvul.001G241800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 4.1e-08 63.2 42 78.6
Atru.chr5.1002 Acer truncatum HOM05D000361 ORTHO05D004243 5.3e-08 62.8 35 80.0
Glyma.15G036000 Glycine max HOM05D001930 ORTHO05D001345 5.3e-08 62.8 42 81.0
MD07G1220200 Malus domestica HOM05D001930 ORTHO05D001345 5.3e-08 62.8 41 80.5
VMungo1383G0091 Vigna mungo HOM05D001930 ORTHO05D001345 5.3e-08 62.8 45 73.3
FvH4_7g24320 Fragaria vesca HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
FAN01G1543 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
FAN03G2510 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
FAN06G1458 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
FAN10G2989 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
RcHm_v2.0_Chr1g0369981 Rosa chinensis HOM05D001930 ORTHO05D001345 1.2e-07 61.6 41 78.0
arahy.Tifrunner.gnm1.ann1.3YE891 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.6e-07 61.2 33 78.8
ClCG11G006220 Citrullus lanatus HOM05D001930 ORTHO05D001345 1.6e-07 61.2 44 70.5
MELO3C008291.2 Cucumis melo HOM05D001930 ORTHO05D001345 1.6e-07 61.2 44 70.5
CsaV3_6G001770 Cucumis sativus L. HOM05D001930 ORTHO05D001345 1.6e-07 61.2 44 70.5
FAN01G2663 Fragaria x ananassa HOM05D001930 ORTHO05D001345 3.5e-07 60.1 41 75.6
Sed0016379 Sechium edule HOM05D001930 ORTHO05D001345 4.5e-07 59.7 52 59.6
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 1.7e-06 57.8 46 65.2
Lj1A953G44 Lonicera japonica HOM05D001930 ORTHO05D001345 2.2e-06 57.4 41 70.7
CANSAT56G0325 Cannabis sativa HOM05D001930 ORTHO05D001345 2.9e-06 57.0 41 70.7
CANSAT56G4542 Cannabis sativa HOM05D001930 ORTHO05D001345 5.0e-06 56.2 41 68.3
Dinv17980 Davidia involucrata HOM05D001930 ORTHO05D001345 6.5e-06 55.8 44 65.9
Lj6g0015169 Lotus japonicus HOM05D001930 ORTHO05D001345 6.5e-06 55.8 42 69.0
LjContig00142g0017848 Lotus japonicus HOM05D001930 ORTHO05D001345 6.5e-06 55.8 42 69.0


User provided reference genes

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