Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.5e-96 355.5 188 100.0
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.8e-84 315.5 190 92.6
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 8.0e-47 191.0 195 60.0
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.8e-46 189.9 202 56.4
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.4e-43 179.5 200 53.0
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.2e-42 177.2 217 58.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 4.6e-42 175.3 200 59.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 6.0e-42 174.9 198 56.1
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.0e-41 174.1 200 57.0
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 8.6e-41 171.0 214 53.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 9.5e-40 167.5 196 52.0
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.6e-39 166.8 198 51.5
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.4e-38 163.7 190 57.9
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 5.2e-38 161.8 182 51.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.2e-37 160.6 198 51.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.2e-37 160.6 202 55.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 8.3e-36 154.5 197 51.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.9e-35 153.3 226 50.0
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-35 153.3 198 49.5
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.4e-35 152.9 188 52.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.2e-35 152.5 199 48.7
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.4e-35 151.8 198 51.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 7.1e-35 151.4 196 46.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.2e-34 150.6 172 48.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.7e-34 149.4 194 46.4
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.5e-34 149.1 199 47.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 7.8e-34 147.9 225 49.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-33 147.1 199 46.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-33 147.1 192 45.8
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-33 146.4 199 46.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.6e-33 144.4 196 51.5
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 8.6e-33 144.4 182 46.2
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 8.6e-33 144.4 93 90.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.1e-32 144.1 192 51.6
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.9e-32 143.3 212 46.7
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-32 143.3 174 46.0
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.9e-32 143.3 210 52.9
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.9e-32 143.3 192 50.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.5e-32 142.9 192 51.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.3e-32 142.5 192 50.5
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-32 141.7 188 45.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.6e-32 141.7 188 45.7
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.6e-31 140.2 180 46.1
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.6e-31 139.0 216 44.9
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.6e-31 139.0 204 46.1
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.6e-31 139.0 201 48.3
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.7e-31 138.7 193 42.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-30 137.5 188 46.3
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.8e-30 136.7 174 47.7
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.8e-30 136.7 194 44.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.4e-30 136.3 176 48.3
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.4e-30 136.3 204 44.1
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.4e-30 136.3 96 84.4
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.0e-30 135.6 205 43.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.8e-30 134.8 189 46.6
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 8.9e-30 134.4 185 45.4
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.5e-29 133.7 191 45.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 2.0e-29 133.3 174 46.6
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 4.4e-29 132.1 189 42.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.2e-28 129.8 192 42.7
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.2e-28 129.8 184 45.1
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.2e-28 129.8 212 39.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.8e-28 129.0 203 43.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 4.9e-28 128.6 193 42.0
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 6.4e-28 128.3 184 44.6
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 6.4e-28 128.3 93 76.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 8.4e-28 127.9 213 42.7
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.1e-27 127.5 210 45.2
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.1e-27 127.5 210 45.2
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.1e-27 127.5 186 43.5
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-27 127.5 219 43.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.1e-27 127.5 191 44.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.2e-27 125.9 197 44.7
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.4e-27 125.2 203 38.4
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.2e-26 124.0 179 45.3
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.2e-26 124.0 167 44.9
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.6e-26 123.6 193 44.6
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 7.8e-26 121.3 185 43.2
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.8e-26 121.3 190 41.1
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.0e-25 120.9 190 44.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.3e-25 120.6 195 39.0
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-25 119.8 200 43.5
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.0e-25 119.4 193 38.9
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.0e-25 119.4 183 44.3
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.0e-25 119.4 195 39.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.1e-25 118.6 177 44.1
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-25 118.2 195 39.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-25 118.2 195 39.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.6e-25 118.2 195 39.0
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 8.6e-25 117.9 195 41.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-24 117.5 195 40.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-24 117.5 200 44.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.5e-24 117.1 170 44.7
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.5e-24 117.1 185 44.9
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-24 116.7 195 38.5
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.9e-24 116.7 163 40.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.5e-24 116.3 200 39.5
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.5e-24 116.3 157 43.9
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 3.3e-24 115.9 172 43.6
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.3e-24 115.5 195 40.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.3e-24 114.8 226 38.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 9.6e-24 114.4 194 39.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.2e-23 114.0 226 39.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-23 114.0 191 38.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-23 113.6 193 38.3
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-23 113.6 193 38.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-23 113.6 193 38.3
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.1e-23 113.2 193 36.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-23 113.2 193 36.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.1e-23 113.2 193 36.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.1e-23 113.2 236 43.6
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-23 113.2 170 40.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 6.2e-23 111.7 184 37.5
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.2e-23 111.7 172 43.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-22 110.9 193 36.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-22 110.9 193 36.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-22 110.5 188 37.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.4e-22 110.5 188 37.8
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.4e-22 109.8 167 40.7
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-22 109.8 192 38.0
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.5e-21 107.1 117 49.6
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.0e-21 106.7 166 39.8
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.0e-21 106.7 182 39.6
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.4e-21 105.9 193 38.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.4e-21 105.9 174 40.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 3.4e-21 105.9 200 41.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 4.4e-21 105.5 171 39.2
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-20 104.0 165 41.2
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.3e-20 104.0 194 43.3
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-20 103.6 159 42.8
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.8e-20 102.4 138 48.6
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 3.8e-20 102.4 197 41.6
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-19 100.9 235 32.3
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-19 100.5 163 42.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.4e-19 100.5 238 34.0
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-19 100.1 191 38.7
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.2e-19 99.4 173 37.0
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.1e-19 98.2 180 48.3
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.6e-18 95.5 184 42.9
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 6.0e-18 95.1 179 38.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 7.8e-18 94.7 168 39.9
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.3e-17 93.2 196 37.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.9e-17 92.4 176 36.9
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.5e-16 89.7 159 43.4
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-14 84.0 194 34.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-14 82.0 113 46.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-13 80.9 164 35.4
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.6e-13 79.7 154 35.1
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-13 79.3 169 33.1
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-13 79.3 169 33.1
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-13 79.3 169 33.1
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 3.4e-13 79.3 176 34.1
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.4e-13 79.3 180 33.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 3.4e-13 79.3 95 41.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 4.5e-13 79.0 169 33.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 4.5e-13 79.0 169 33.1
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.8e-13 78.6 169 34.3
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.9e-13 77.8 172 32.0
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.9e-13 77.8 165 33.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.7e-12 77.0 181 32.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.9e-12 76.3 100 45.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 8.4e-12 74.7 178 32.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 3.5e-10 69.3 120 44.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 6.0e-10 68.6 150 32.7
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.0e-09 67.8 129 40.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.7e-09 64.7 143 35.0
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-08 64.3 122 36.1
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.5e-08 63.9 161 31.1


User provided reference genes

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