Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 0.0e+00 2308.9 1162 100.0
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 0.0e+00 1359.0 1130 63.8
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 0.0e+00 1330.5 1229 60.8
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 0.0e+00 1268.4 1203 59.4
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 0.0e+00 1261.9 1200 59.5
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 0.0e+00 1247.3 1198 58.8
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 0.0e+00 1244.2 1191 60.0
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 0.0e+00 1171.8 1165 58.2
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 0.0e+00 1123.6 1177 55.8
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 0.0e+00 1115.5 1122 57.2
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 0.0e+00 1089.3 1193 53.9
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.0e-309 1067.0 1200 54.0
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 3.3e-308 1062.0 1124 55.6
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 1.6e-307 1059.7 1122 56.1
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 8.1e-307 1057.4 1157 54.1
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 4.0e-306 1055.0 1187 53.8
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 4.6e-302 1041.6 1126 54.5
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 5.6e-300 1034.6 1238 51.3
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 5.1e-293 1011.5 983 59.8
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 5.3e-290 1001.5 1207 51.7
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.6e-283 979.9 1164 51.1
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 7.2e-279 964.5 1147 51.5
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 3.7e-251 872.5 1147 48.6
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.7e-209 733.4 1193 41.5
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 2.2e-203 713.8 1207 41.3
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 2.3e-200 703.7 1327 37.6
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 1.4e-197 694.5 544 69.3
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 2.2e-179 634.0 1210 38.9
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 2.4e-173 614.0 1147 37.7
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 1.5e-172 611.3 1070 40.6
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 7.6e-172 609.0 1195 38.7
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 3.8e-171 606.7 1182 38.3
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 1.9e-170 604.4 1223 37.3
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 1.8e-168 597.8 1185 37.2
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 4.1e-165 586.6 1211 38.0
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 1.5e-164 584.7 1204 37.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 7.2e-162 575.9 1139 37.9
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 7.9e-161 572.4 1212 36.0
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.8e-160 571.2 1179 36.5
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.3e-159 567.0 1209 37.1
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.1e-157 560.5 1215 35.6
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 2.5e-154 550.8 1156 35.3
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 2.5e-154 550.8 1131 35.0
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 3.2e-154 550.4 1287 34.3
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.2e-153 548.5 534 56.9
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 6.1e-153 546.2 1184 36.5
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 6.7e-152 542.7 1197 35.9
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 4.8e-150 536.6 1206 36.1
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.4e-149 535.0 1207 35.9
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 7.7e-148 529.3 994 39.4
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 3.8e-147 526.9 1211 35.8
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.5e-146 525.0 1214 36.1
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 5.2e-144 516.5 1185 34.9
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.5e-143 515.0 1202 33.7
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 2.6e-143 514.2 1170 35.0
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 9.7e-143 512.3 940 38.4
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.2e-140 505.4 1184 34.9
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 1.9e-138 498.0 1221 34.2
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 4.2e-138 496.9 1176 33.8
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 1.0e-136 492.3 1213 33.0
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 3.4e-135 487.3 1215 32.8
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 9.8e-135 485.7 1224 32.7
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.2e-134 484.6 1191 33.8
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 6.3e-134 483.0 1222 32.4
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 2.4e-133 481.1 1140 32.9
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 3.5e-132 477.2 1194 33.9
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 3.8e-131 473.8 1152 32.5
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 4.7e-129 466.8 1314 32.8
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 5.2e-128 463.4 1149 32.2
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 5.2e-128 463.4 581 52.3
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 2.6e-127 461.1 1159 32.3
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 1.3e-126 458.8 1207 32.4
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 2.2e-126 458.0 1186 31.4
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 1.4e-125 455.3 1147 31.9
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 9.2e-125 452.6 1178 33.4
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 1.2e-121 442.2 1206 30.9
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 4.0e-120 437.2 1167 31.7
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 2.9e-118 431.0 1168 33.0
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 6.4e-118 429.9 1170 31.7
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 8.3e-118 429.5 1253 30.5
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.1e-114 419.1 1197 31.0
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 3.3e-114 417.5 1203 32.2
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 5.6e-114 416.8 1138 31.8
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 3.6e-113 414.1 1171 32.3
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 1.4e-112 412.1 1234 30.5
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 6.8e-112 409.8 1220 29.9
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 3.4e-111 407.5 1320 29.5
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 7.5e-111 406.4 1181 31.4
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 4.9e-110 403.7 1241 30.0
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.1e-109 402.5 1176 31.0
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 1.4e-109 402.1 1196 31.4
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 4.1e-109 400.6 1183 32.0
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 3.0e-107 394.4 1220 29.3
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 3.9e-107 394.0 1174 30.7
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 9.9e-103 379.4 1193 30.3
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.7e-102 378.6 1191 30.1
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 7.8e-100 369.8 1340 27.8
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 3.9e-99 367.5 1193 29.4
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 3.9e-99 367.5 1164 31.2
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 9.5e-98 362.8 679 36.8
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 8.1e-97 359.8 1191 29.5
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.5e-95 355.5 773 35.6
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.2e-93 347.8 1512 25.3
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 5.4e-93 347.1 1051 30.3
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.2e-92 345.9 930 32.2
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 3.5e-92 344.4 360 55.6
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 8.1e-89 333.2 808 32.9
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 5.4e-85 320.5 1131 28.5
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 4.6e-84 317.4 901 31.0
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 7.8e-84 316.6 760 33.8
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 4.3e-82 310.8 1076 29.2
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 9.6e-82 309.7 386 44.6
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.9e-77 295.4 727 32.2
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 1.3e-75 289.3 1124 26.6
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 1.8e-67 262.3 1162 26.0
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 1.5e-66 259.2 623 34.0
VMungo1383G1238 Vigna mungo HOM05D004094 ORTHO05D004601 4.8e-65 254.2 425 42.1
Eucgr.F03782 Eucalyptus grandis HOM05D004094 ORTHO05D004601 4.1e-48 198.0 574 31.7
FAN27G0677 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.3e-46 193.0 580 31.2
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 4.1e-40 171.4 344 34.3
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 9.1e-40 170.2 460 31.7
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 5.9e-39 167.5 557 28.0
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 1.3e-38 166.4 358 33.2
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 1.9e-37 162.5 647 26.7
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 2.5e-37 162.2 390 30.0
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 2.6e-34 152.1 573 26.0
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 8.2e-33 147.1 392 32.1
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 3.5e-31 141.7 276 37.7
COL.COLO4_35940 Corchorus olitorius HOM05D004094 ORTHO05D004601 1.5e-29 136.3 433 30.0
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 5.2e-27 127.9 650 25.7
TWI36G0382 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.5e-26 126.3 419 31.3
GSVIVG01008881001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.5e-26 126.3 265 37.0
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 7.5e-26 124.0 612 23.7
PGSC0003DMG400017557 Solanum tuberosum HOM05D004094 ORTHO05D004601 5.3e-24 117.9 260 32.3
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 2.0e-23 115.9 397 29.0
Duzib093G1173 Durio zibethinus HOM05D004094 ORTHO05D004601 4.5e-23 114.8 168 42.3
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 1.0e-22 113.6 108 57.4
Dinv27324 Davidia involucrata HOM05D004094 ORTHO05D004601 3.6e-20 105.1 161 42.2
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 8.3e-17 94.0 97 51.5
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 1.1e-16 93.6 321 26.8
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 1.4e-16 93.2 117 42.7
Actinidia02614 Actinidia chinensis HOM05D004094 ORTHO05D004601 3.5e-15 88.6 255 29.4
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 4.5e-15 88.2 106 39.6
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 2.5e-13 82.4 65 63.1
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 3.3e-13 82.0 122 36.9
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 4.2e-13 81.6 123 38.2
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 1.6e-12 79.7 125 35.2
Cfa008660 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.6e-10 72.4 51 60.8
Cfa003011 Carpinus fangiana HOM05D004094 ORTHO05D004601 9.8e-10 70.5 51 58.8
Lj7A339G41 Lonicera japonica HOM05D004094 ORTHO05D004601 2.4e-08 65.9 78 47.4
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 1.2e-07 63.5 422 24.4
BolC2t09506H Brassica oleracea HOM05D004094 ORTHO05D004601 1.6e-07 63.2 358 25.4
CBR_g36402 Chara braunii HOM05D004977 ORTHO05D006454 4.5e-07 61.6 324 24.1
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 1.3e-06 60.1 312 22.8
Thecc.10G121800 Theobroma cacao HOM05D004977 ORTHO05D006454 2.3e-06 59.3 334 23.7
Glyma.06G308700 Glycine max HOM05D004977 ORTHO05D006454 2.9e-06 58.9 291 22.0
Glyma.12G096100 Glycine max HOM05D004977 ORTHO05D006454 3.8e-06 58.5 291 22.0
Duzib114G0826 Durio zibethinus HOM05D004977 ORTHO05D006454 5.0e-06 58.2 291 22.0
VMungo1127G0498 Vigna mungo HOM05D001535 ORTHO05D004601 5.0e-06 58.2 44 56.8
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 6.6e-06 57.8 127 31.5
TPR.G4657 Trifolium pratense HOM05D004977 ORTHO05D006454 6.6e-06 57.8 321 23.1
COL.COLO4_16322 Corchorus olitorius HOM05D004977 ORTHO05D006454 8.6e-06 57.4 291 22.0
SHI23040 Sapria himalayana HOM05D004094 ORTHO05D004601 8.6e-06 57.4 162 31.5


User provided reference genes

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