Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 9.7e-61 236.5 109 100.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 1.4e-38 162.9 113 77.9
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.7e-36 156.0 116 69.8
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.2e-36 155.6 111 69.4
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 5.3e-35 151.0 116 68.1
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 2.7e-31 138.7 117 60.7
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 5.2e-30 134.4 113 57.5
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 5.7e-29 131.0 106 60.4
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 1.6e-26 122.9 117 59.0
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 1.5e-24 116.3 94 70.2
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.2e-23 113.2 120 55.0
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 2.8e-23 112.1 119 54.6
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-19 99.0 97 52.6
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.4e-19 97.8 97 51.5
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.2e-19 97.1 97 51.5
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.7e-18 95.5 95 50.5
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.9e-18 94.4 98 51.0
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 1.3e-17 93.2 96 52.1
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 1.3e-17 93.2 110 50.0
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.7e-17 92.8 98 49.0
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.3e-17 92.4 111 45.0
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.3e-17 92.4 98 50.0
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.3e-17 92.4 98 50.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 6.6e-17 90.9 103 48.5
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 6.6e-17 90.9 103 48.5
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 8.6e-17 90.5 114 47.4
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.1e-16 90.1 110 44.5
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.9e-16 89.4 90 50.0
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.5e-16 89.0 111 43.2
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.3e-16 88.2 68 58.8
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 5.6e-16 87.8 112 44.6
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 5.6e-16 87.8 102 50.0
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 3.6e-15 85.1 100 49.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 6.1e-15 84.3 96 45.8
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.0e-14 83.6 111 45.9
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.8e-14 82.8 102 44.1
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.8e-14 82.8 111 45.9
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.0e-14 82.0 111 45.0
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.0e-14 82.0 111 45.0
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 5.2e-14 81.3 103 43.7
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.2e-14 81.3 91 49.5
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 6.8e-14 80.9 86 46.5
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 8.9e-14 80.5 73 52.1
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 8.9e-14 80.5 91 48.4
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.5e-13 79.7 88 48.9
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 4.4e-13 78.2 107 43.9
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 5.8e-13 77.8 94 43.6
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 7.5e-13 77.4 95 46.3
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 9.8e-13 77.0 103 38.8
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 2.2e-12 75.9 87 46.0
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.9e-12 75.5 98 41.8
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 3.7e-12 75.1 105 42.9
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 3.7e-12 75.1 111 41.4
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 8.3e-12 73.9 100 47.0
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.1e-11 73.6 71 45.1
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.4e-11 73.2 99 47.5
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.4e-11 72.4 62 53.2
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 2.4e-11 72.4 71 45.1
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.4e-11 72.4 101 43.6
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.2e-11 72.0 62 51.6
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.2e-11 72.0 89 43.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 3.2e-11 72.0 81 44.4
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 3.2e-11 72.0 81 44.4
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.1e-11 71.6 95 40.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.4e-11 71.2 62 51.6
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.4e-11 71.2 62 51.6
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 5.4e-11 71.2 94 43.6
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 5.4e-11 71.2 111 40.5
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 5.4e-11 71.2 115 36.5
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 7.0e-11 70.9 100 44.0
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.0e-11 70.9 115 42.6
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.0e-11 70.9 77 42.9
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.2e-10 70.1 73 43.8
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-10 70.1 84 45.2
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 2.7e-10 68.9 69 46.4
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.5e-10 68.6 63 52.4
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 3.5e-10 68.6 78 46.2
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 3.5e-10 68.6 104 42.3
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 4.6e-10 68.2 93 41.9
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 4.6e-10 68.2 115 41.7
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.6e-10 68.2 96 41.7
BcaB01g04038 Brassica carinata HOM05D012534 ORTHO05D003275 6.0e-10 67.8 114 40.4
C03p20780 Brassica napus HOM05D012534 ORTHO05D003275 6.0e-10 67.8 114 40.4
BolC3t14445H Brassica oleracea HOM05D012534 ORTHO05D003275 6.0e-10 67.8 114 40.4
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.0e-10 67.8 87 43.7
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 6.0e-10 67.8 62 48.4
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.8e-10 67.4 109 37.6
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 7.8e-10 67.4 114 40.4
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.8e-10 67.4 114 40.4
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.0e-09 67.0 76 42.1
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 1.0e-09 67.0 97 39.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.0e-09 67.0 96 40.6
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.3e-09 66.6 106 43.4
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.3e-09 66.6 78 46.2
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 1.3e-09 66.6 97 38.1
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 1.7e-09 66.2 108 42.6
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.7e-09 66.2 69 47.8
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.7e-09 66.2 104 39.4
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.7e-09 66.2 91 41.8
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.7e-09 66.2 105 39.0
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.3e-09 65.9 110 38.2
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.3e-09 65.9 66 53.0
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.3e-09 65.9 89 42.7
AL4G17390 Arabidopsis lyrata HOM05D012534 ORTHO05D003275 3.0e-09 65.5 111 42.3
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.0e-09 65.5 60 46.7
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 3.0e-09 65.5 65 52.3
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.0e-09 65.5 70 51.4
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 3.0e-09 65.5 65 47.7
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 3.0e-09 65.5 78 43.6
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 3.0e-09 65.5 78 46.2
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.0e-09 65.5 109 36.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 3.9e-09 65.1 69 46.4
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 3.9e-09 65.1 117 39.3
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 3.9e-09 65.1 95 41.1
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 3.9e-09 65.1 85 44.7
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 5.0e-09 64.7 70 47.1
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 5.0e-09 64.7 70 45.7
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 5.0e-09 64.7 78 39.7
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.0e-09 64.7 66 53.0
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 5.0e-09 64.7 105 39.0
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 8.6e-09 63.9 98 41.8
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 1.1e-08 63.5 112 39.3
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.1e-08 63.5 70 45.7
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.5e-08 63.2 113 36.3
Carub.0004s0551 Capsella rubella HOM05D012534 ORTHO05D003275 1.9e-08 62.8 121 38.0
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 1.9e-08 62.8 113 35.4
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.9e-08 62.8 70 47.1
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.5e-08 62.4 71 45.1
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 2.5e-08 62.4 72 44.4
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 3.3e-08 62.0 76 46.1
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 3.3e-08 62.0 105 37.1
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 4.3e-08 61.6 91 38.5
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 5.6e-08 61.2 79 43.0
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 5.6e-08 61.2 87 46.0
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 5.6e-08 61.2 68 45.6
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 7.3e-08 60.8 65 47.7
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 7.3e-08 60.8 64 50.0
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.3e-08 60.8 69 46.4
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.3e-08 60.8 69 46.4
Sp4g05350 Schrenkiella parvula HOM05D012534 ORTHO05D003275 7.3e-08 60.8 114 38.6
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 7.3e-08 60.8 109 33.0
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.3e-08 60.8 115 36.5
A03p17690 Brassica napus HOM05D012534 ORTHO05D003275 9.5e-08 60.5 114 40.4
BraA03t11034Z Brassica rapa HOM05D012534 ORTHO05D003275 9.5e-08 60.5 114 40.4
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 9.5e-08 60.5 105 37.1
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.5e-08 60.5 82 45.1
Aa31LG5G9940 Aethionema arabicum HOM05D012534 ORTHO05D003275 1.2e-07 60.1 109 42.2
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.2e-07 60.1 36 69.4
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 69 46.4
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.2e-07 60.1 105 34.3
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.6e-07 59.7 97 37.1
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.1e-07 59.3 99 34.3
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 2.1e-07 59.3 68 45.6
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.1e-07 59.3 72 43.1
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 2.1e-07 59.3 71 42.3
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 2.8e-07 58.9 59 45.8
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 2.8e-07 58.9 135 31.1
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 2.8e-07 58.9 58 51.7
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.6e-07 58.5 79 41.8
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 4.7e-07 58.2 60 46.7
PGSC0003DMG400000319 Solanum tuberosum HOM05D003277 ORTHO05D003275 4.7e-07 58.2 107 33.6
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 4.7e-07 58.2 77 40.3
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 6.2e-07 57.8 72 43.1
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 6.2e-07 57.8 58 53.4
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 8.0e-07 57.4 59 50.8
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 8.0e-07 57.4 87 39.1
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 8.0e-07 57.4 69 39.1
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.1e-06 57.0 64 48.4
unitig_578.g16687 Utricularia gibba HOM05D003277 ORTHO05D003275 1.1e-06 57.0 63 49.2
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 1.4e-06 56.6 65 47.7
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-06 56.6 69 42.0
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.4e-06 56.6 99 38.4
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.8e-06 56.2 78 41.0
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-06 56.2 62 46.8
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.8e-06 56.2 62 46.8
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 3.1e-06 55.5 58 50.0
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 4.0e-06 55.1 103 39.8
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 5.2e-06 54.7 58 50.0
Psat7g251640 Pisum sativum HOM05D003277 ORTHO05D003275 6.8e-06 54.3 58 50.0


User provided reference genes

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