Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 3.3e-64 248.8 189 100.0
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 1.6e-47 193.4 117 87.2
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 4.7e-39 165.2 121 73.6
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 3.4e-37 159.1 120 70.0
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 3.4e-37 159.1 120 70.0
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 5.8e-37 158.3 106 74.5
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 1.2e-34 150.6 90 80.0
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 1.9e-32 143.3 87 79.3
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 7.3e-32 141.4 106 67.0
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 9.6e-32 141.0 127 59.8
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 9.6e-32 141.0 122 60.7
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 2.8e-31 139.4 109 65.1
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 4.8e-31 138.7 99 66.7
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 1.1e-30 137.5 89 74.2
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 1.8e-30 136.7 86 72.1
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 2.4e-30 136.3 114 64.0
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 3.1e-30 136.0 87 74.7
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 4.0e-30 135.6 99 65.7
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 6.9e-30 134.8 109 63.3
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 9.0e-30 134.4 113 62.8
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 9.0e-30 134.4 89 70.8
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 1.2e-29 134.0 121 62.8
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 1.5e-29 133.7 89 71.9
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 1.5e-29 133.7 100 65.0
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 4.5e-29 132.1 87 71.3
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 4.5e-29 132.1 118 57.6
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 5.8e-29 131.7 123 60.2
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 5.8e-29 131.7 108 65.7
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 9.9e-29 131.0 111 62.2
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 1.7e-28 130.2 115 63.5
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 2.2e-28 129.8 121 59.5
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 2.2e-28 129.8 129 56.6
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 2.9e-28 129.4 86 70.9
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 2.9e-28 129.4 116 60.3
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 3.8e-28 129.0 113 62.8
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 4.9e-28 128.6 119 60.5
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 4.9e-28 128.6 95 62.1
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 4.9e-28 128.6 125 56.0
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 8.4e-28 127.9 86 69.8
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 1.1e-27 127.5 111 62.2
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 1.4e-27 127.1 94 64.9
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 1.9e-27 126.7 91 69.2
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 1.9e-27 126.7 108 62.0
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 2.4e-27 126.3 89 69.7
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 7.1e-27 124.8 92 66.3
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 7.1e-27 124.8 92 66.3
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 7.1e-27 124.8 87 67.8
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 7.1e-27 124.8 110 60.9
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 1.2e-26 124.0 107 60.7
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 1.2e-26 124.0 107 60.7
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 1.2e-26 124.0 107 60.7
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 1.2e-26 124.0 92 64.1
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 1.6e-26 123.6 119 58.8
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.6e-26 123.6 110 57.3
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 2.1e-26 123.2 86 67.4
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 2.1e-26 123.2 127 54.3
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 2.7e-26 122.9 95 63.2
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 2.7e-26 122.9 95 62.1
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 3.5e-26 122.5 119 50.4
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 3.5e-26 122.5 90 65.6
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 3.5e-26 122.5 99 58.6
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 3.5e-26 122.5 111 54.1
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 3.5e-26 122.5 120 55.8
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 4.6e-26 122.1 89 65.2
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 4.6e-26 122.1 104 59.6
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 6.0e-26 121.7 94 66.0
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 7.9e-26 121.3 119 53.8
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 1.0e-25 120.9 89 64.0
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 1.0e-25 120.9 89 64.0
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 1.0e-25 120.9 89 64.0
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.0e-25 120.9 90 64.4
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 1.0e-25 120.9 85 65.9
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 1.3e-25 120.6 92 64.1
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 1.3e-25 120.6 90 62.2
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 2.3e-25 119.8 84 66.7
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 2.3e-25 119.8 90 64.4
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 2.3e-25 119.8 90 64.4
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.3e-25 119.8 90 64.4
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 3.0e-25 119.4 84 67.9
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 3.0e-25 119.4 111 55.9
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 3.0e-25 119.4 115 54.8
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 3.0e-25 119.4 111 57.7
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 3.9e-25 119.0 84 65.5
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 3.9e-25 119.0 89 62.9
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 3.9e-25 119.0 105 57.1
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 6.7e-25 118.2 89 62.9
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 8.7e-25 117.9 89 64.0
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 8.7e-25 117.9 89 64.0
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 8.7e-25 117.9 88 62.5
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 1.5e-24 117.1 89 64.0
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 2.5e-24 116.3 89 62.9
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 2.5e-24 116.3 113 55.8
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 3.3e-24 115.9 90 64.4
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 4.3e-24 115.5 105 57.1
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 3.7e-23 112.5 112 55.4
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 4.8e-23 112.1 91 57.1
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 4.8e-23 112.1 85 61.2
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 6.2e-23 111.7 102 58.8
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 6.2e-23 111.7 111 55.9
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 6.2e-23 111.7 87 63.2
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 1.4e-22 110.5 117 53.8
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 1.8e-22 110.2 99 59.6
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 4.0e-22 109.0 84 61.9
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 6.9e-22 108.2 124 50.0
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 9.0e-22 107.8 77 63.6
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 1.2e-21 107.5 105 53.3
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 4.5e-21 105.5 139 43.9
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 1.3e-20 104.0 88 55.7
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 4.9e-20 102.1 105 52.4
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 2.5e-19 99.8 78 62.8
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 5.5e-19 98.6 86 52.3
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 7.1e-19 98.2 107 47.7
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 6.0e-18 95.1 124 45.2
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 6.0e-18 95.1 112 45.5
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 1.0e-17 94.4 122 42.6
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 1.3e-17 94.0 84 56.0
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 2.3e-17 93.2 73 64.4
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 2.5e-16 89.7 91 45.1
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 2.1e-15 86.7 55 72.7
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 4.8e-15 85.5 114 43.0
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 6.2e-15 85.1 115 44.3
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 8.2e-15 84.7 106 49.1
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 2.4e-14 83.2 89 46.1
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 3.1e-14 82.8 114 42.1
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 4.0e-14 82.4 68 63.2
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 2.2e-12 76.6 92 44.6
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 3.2e-11 72.8 46 73.9
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 1.2e-10 70.9 57 56.1
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 2.5e-08 63.2 58 44.8
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 2.2e-07 60.1 75 48.0
MELO3C016433.2 Cucumis melo HOM05D005678 ORTHO05D006894 3.1e-06 56.2 65 50.8
Haze_20337 Corylus avellana HOM05D005678 ORTHO05D006894 9.0e-06 54.7 34 70.6


User provided reference genes

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