Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.6e-14 80.9 41 100.0
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.7e-13 77.0 40 97.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.7e-13 77.0 40 97.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 6.3e-13 76.3 40 92.5
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.4e-12 75.1 39 92.3
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.4e-12 75.1 39 92.3
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.4e-12 74.3 40 92.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 3.1e-12 73.9 40 92.5
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 7.0e-12 72.8 40 87.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.2e-11 72.0 40 85.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.6e-11 71.6 40 85.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.6e-11 70.9 40 80.0
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 3.5e-11 70.5 35 100.0
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.5e-11 70.5 40 85.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 4.5e-11 70.1 39 87.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 5.9e-11 69.7 40 82.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 7.7e-11 69.3 40 82.5
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.7e-11 69.3 40 80.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 7.7e-11 69.3 39 87.2
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.0e-10 68.9 40 82.5
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.0e-10 68.9 40 82.5
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.0e-10 68.9 36 94.4
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.0e-10 68.9 39 87.2
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.3e-10 68.6 40 82.5
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.2e-10 67.8 40 82.5
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.2e-10 67.8 40 82.5
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.9e-10 67.4 38 86.8
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 2.9e-10 67.4 40 80.0
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 3.8e-10 67.0 40 75.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.8e-10 67.0 40 82.5
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.0e-10 66.6 40 80.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 5.0e-10 66.6 40 80.0
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 5.0e-10 66.6 40 80.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.0e-10 66.6 40 77.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.0e-10 66.6 40 80.0
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.0e-10 66.6 40 80.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.5e-10 66.2 40 80.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.5e-10 66.2 40 77.5
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 8.5e-10 65.9 39 82.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 77.5
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.5e-10 65.9 39 82.1
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.5e-10 65.9 39 82.1
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.5e-10 65.9 39 82.1
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 8.5e-10 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-09 65.5 40 80.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-09 65.5 40 80.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-09 65.5 40 80.0
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.1e-09 65.5 40 80.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.5e-09 65.1 40 80.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.9e-09 64.7 40 77.5
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-09 64.7 40 75.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-09 64.7 40 75.0
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.5e-09 64.3 40 77.5
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.2e-09 63.9 40 77.5
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.2e-09 63.9 39 76.9
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.2e-09 63.9 39 76.9
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 4.2e-09 63.5 38 81.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 4.2e-09 63.5 40 72.5
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.2e-09 63.5 40 77.5
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 5.5e-09 63.2 40 75.0
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.5e-09 63.2 39 79.5
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.2e-09 62.8 39 76.9
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 7.2e-09 62.8 40 72.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 9.4e-09 62.4 40 70.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 9.4e-09 62.4 39 79.5
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 9.4e-09 62.4 40 75.0
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.2e-08 62.0 39 76.9
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.2e-08 62.0 40 77.5
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.2e-08 62.0 40 77.5
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.6e-08 61.6 40 77.5
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.1e-08 61.2 40 72.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-08 61.2 39 76.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.7e-08 60.8 39 74.4
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 3.6e-08 60.5 40 72.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.6e-08 60.5 40 75.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.6e-08 60.5 40 75.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.6e-08 60.5 40 75.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.6e-08 60.5 39 74.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.7e-08 60.1 40 72.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.1e-08 59.7 39 71.8
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 6.1e-08 59.7 40 72.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.0e-08 59.3 39 74.4
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 8.0e-08 59.3 39 74.4
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.0e-08 59.3 40 72.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 8.0e-08 59.3 38 76.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 8.0e-08 59.3 40 72.5
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.0e-07 58.9 40 70.0
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.0e-07 58.9 39 71.8
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.0e-07 58.9 39 71.8
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.0e-07 58.9 40 70.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.0e-07 58.9 40 67.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.0e-07 58.9 40 70.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.4e-07 58.5 40 72.5
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.8e-07 58.2 40 62.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.8e-07 58.2 40 67.5
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.3e-07 57.8 40 67.5
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.3e-07 57.8 40 67.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.3e-07 57.8 40 72.5
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.3e-07 57.8 40 70.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 3.0e-07 57.4 39 69.2
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 6.7e-07 56.2 40 67.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 6.7e-07 56.2 40 65.0
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 6.7e-07 56.2 38 73.7
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 65.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 65.0
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 65.0
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 65.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 65.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 8.8e-07 55.8 40 62.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.5e-06 55.1 40 65.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.5e-06 55.1 40 62.5
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.5e-06 55.1 40 65.0
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.5e-06 55.1 39 66.7
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.0e-06 54.7 40 60.0
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.0e-06 54.7 40 62.5
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.0e-06 54.7 40 62.5
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 3.3e-06 53.9 40 62.5
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.3e-06 53.9 40 62.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.4e-06 53.5 40 60.0
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 4.4e-06 53.5 40 60.0
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 4.4e-06 53.5 40 60.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 9.7e-06 52.4 40 57.5
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 9.7e-06 52.4 40 57.5
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 9.7e-06 52.4 40 57.5
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 9.7e-06 52.4 40 57.5


User provided reference genes

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