Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.3e-106 389.8 201 100.0
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.3e-106 389.8 201 100.0
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.8e-106 387.9 201 99.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.9e-99 365.9 202 95.0
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.6e-96 355.5 201 91.5
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.1e-93 345.9 201 90.5
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.4e-92 343.2 201 89.1
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 3.0e-92 342.0 201 88.6
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.1e-89 333.6 201 84.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 5.3e-89 331.3 208 85.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.1e-86 323.6 202 85.1
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 8.8e-84 313.9 203 80.8
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.2e-80 303.5 202 77.7
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 6.5e-79 297.7 201 76.6
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 8.5e-79 297.4 202 77.2
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.9e-78 296.2 202 76.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.7e-77 292.4 203 76.4
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 4.7e-77 291.6 201 74.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.0e-76 290.4 203 76.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.4e-76 290.0 202 73.3
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.8e-76 289.7 204 76.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.3e-76 289.3 202 74.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 6.7e-76 287.7 204 75.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.6e-75 285.8 206 74.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 3.3e-75 285.4 204 74.5
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.4e-75 285.0 201 74.6
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 7.5e-75 284.3 195 75.4
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 9.7e-75 283.9 202 75.7
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.3e-74 283.5 203 72.9
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.8e-74 281.6 206 73.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 8.2e-74 280.8 204 74.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.2e-74 280.8 206 72.8
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.1e-73 278.9 186 75.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 4.1e-73 278.5 203 74.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.3e-73 278.1 201 74.1
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.2e-72 276.9 154 91.6
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.2e-72 276.9 206 73.8
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.2e-72 276.9 205 73.7
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.0e-72 276.2 203 73.4
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.5e-72 275.0 201 72.6
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.7e-72 274.2 204 72.5
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.7e-72 274.2 154 91.6
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-71 273.9 179 80.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-71 273.9 179 80.4
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.2e-71 272.7 202 72.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 8.5e-71 270.8 202 72.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 8.5e-71 270.8 209 71.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.9e-70 269.6 202 71.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.5e-70 269.2 205 70.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 4.2e-70 268.5 202 70.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.5e-70 268.1 173 77.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 7.2e-70 267.7 203 69.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 7.2e-70 267.7 220 67.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 7.2e-70 267.7 205 70.2
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-69 266.9 171 77.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.7e-69 265.8 201 71.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.7e-69 265.0 189 72.0
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.7e-69 265.0 176 77.3
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.0e-67 259.6 211 66.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.0e-67 259.6 201 68.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.7e-67 258.1 146 87.7
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.5e-67 257.7 236 62.7
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 7.5e-67 257.7 201 68.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.8e-67 257.3 205 67.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.7e-66 256.5 170 77.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.2e-66 256.1 161 78.3
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 6.3e-66 254.6 149 81.9
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 6.3e-66 254.6 171 76.6
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 6.3e-66 254.6 171 76.6
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.4e-65 253.4 176 73.9
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 7.0e-65 251.1 207 66.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 9.1e-65 250.8 149 85.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.1e-65 250.8 149 81.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.0e-64 249.6 208 66.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.0e-64 249.6 248 59.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.5e-64 248.4 211 64.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 4.5e-64 248.4 212 66.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.7e-64 247.7 149 81.9
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.0e-63 247.3 149 81.9
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.7e-63 246.5 149 81.2
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.7e-63 246.5 196 69.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.3e-63 246.1 207 66.2
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.0e-63 245.0 149 81.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.5e-62 243.4 212 61.8
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-62 243.0 149 78.5
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.5e-62 242.7 160 78.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.5e-62 242.7 147 81.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.3e-62 242.3 182 71.4
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 3.3e-62 242.3 149 78.5
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.1e-61 239.6 149 79.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.8e-61 239.2 204 66.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 6.1e-61 238.0 149 79.2
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.4e-60 236.9 151 75.5
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 2.3e-60 236.1 151 76.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.0e-60 235.3 201 63.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.8e-60 234.6 149 79.9
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.8e-60 234.6 149 77.2
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 6.8e-60 234.6 149 81.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 8.9e-60 234.2 142 83.1
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-59 233.8 186 66.1
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.2e-59 233.8 186 66.1
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.5e-59 233.4 214 63.1
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 4.4e-59 231.9 203 63.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 5.7e-59 231.5 202 63.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.5e-59 231.1 185 68.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 7.5e-59 231.1 147 76.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.7e-58 229.9 160 72.5
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.2e-58 229.6 161 72.7
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.8e-58 229.2 242 57.4
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.8e-58 229.2 149 75.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 4.9e-58 228.4 165 70.3
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 4.9e-58 228.4 202 66.8
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-57 227.3 203 67.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-57 226.9 202 66.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.8e-57 226.5 149 76.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.4e-57 226.1 202 59.9
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 4.1e-57 225.3 212 60.8
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 9.2e-57 224.2 203 66.0
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.5e-56 221.9 177 66.7
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.5e-56 221.9 202 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 7.8e-56 221.1 154 70.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.8e-56 221.1 181 66.9
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.5e-54 216.9 143 76.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.9e-54 216.5 177 66.1
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-54 216.5 219 62.1
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-54 216.5 219 62.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 7.3e-54 214.5 201 59.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.2e-53 213.8 225 57.8
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.1e-53 213.0 216 56.0
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.1e-53 211.5 149 72.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 8.0e-53 211.1 167 68.9
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.1e-52 209.1 193 62.7
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-51 206.8 219 59.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.9e-50 202.6 124 79.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 8.3e-50 201.1 124 79.8
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.4e-49 199.5 196 54.1
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.7e-48 196.1 159 67.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.7e-48 196.1 154 64.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.3e-47 193.7 186 60.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.6e-46 188.3 149 65.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.2e-45 187.2 155 60.6
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.1e-44 184.1 186 56.5
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.5e-43 180.3 106 82.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.8e-43 178.3 150 60.0
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 9.8e-43 177.6 144 68.1
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 4.9e-42 175.3 109 79.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 6.4e-42 174.9 163 58.3
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.3e-38 162.5 116 69.0
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 5.6e-38 161.8 83 96.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.6e-35 152.9 94 81.9
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.4e-33 147.1 90 83.3
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.3e-31 139.8 135 60.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 4.3e-30 135.6 116 63.8
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 6.2e-29 131.7 150 54.7
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 3.3e-22 109.4 155 36.8
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 9.6e-22 107.8 97 55.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.8e-20 103.6 83 62.7
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 9.9e-19 97.8 180 32.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.9e-14 83.6 77 59.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 9.0e-12 74.7 68 58.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 3.8e-10 69.3 187 30.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.4e-09 67.4 60 53.3
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 1.0e-07 61.2 102 43.1
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.8e-07 60.5 70 50.0
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 2.5e-06 56.6 32 78.1


User provided reference genes

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