Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1678.7 856 100.0
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1620.5 856 96.7
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1586.6 856 94.5
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1516.9 856 90.0
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1496.1 857 88.3
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1469.9 857 87.0
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1461.0 857 86.7
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 1450.3 856 86.0
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1415.2 865 83.4
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1387.1 859 82.5
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 1355.5 858 79.5
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 1342.0 858 79.1
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1341.6 857 79.0
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 1341.6 858 79.8
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 1338.2 858 79.5
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 1335.5 857 78.8
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1333.9 858 78.1
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 1333.2 858 78.7
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1332.4 859 78.8
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1331.2 860 78.5
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 1331.2 858 79.1
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 1330.9 858 78.6
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1330.9 859 78.7
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1330.9 859 78.7
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1328.5 858 79.1
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1327.8 858 78.8
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 1325.8 857 78.6
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1325.5 858 78.9
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1320.8 858 78.1
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1320.1 857 78.3
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1319.7 858 78.1
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1319.3 858 78.7
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 1318.5 858 78.2
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1318.1 858 77.9
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1314.3 716 92.5
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 1311.2 858 77.0
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 1310.0 883 76.1
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 1307.4 858 76.7
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 1307.0 858 76.1
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 1304.7 858 78.0
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1298.9 837 77.9
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 1291.6 858 76.7
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 1291.6 858 76.1
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 1285.4 858 75.3
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 1285.0 858 75.5
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 1284.6 858 75.9
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1281.2 858 74.8
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1279.2 856 76.2
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 1278.1 857 74.3
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 1277.7 859 75.8
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 1277.3 858 74.9
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 1276.9 858 74.8
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1276.5 858 74.6
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1275.0 857 76.1
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 1275.0 860 75.9
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 1273.8 857 74.6
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1273.8 859 74.6
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 1273.8 859 74.6
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 1271.5 858 74.6
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1271.5 856 76.5
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 1270.8 858 74.9
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1270.8 858 75.2
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 1270.0 858 74.7
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1270.0 859 74.4
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 1270.0 859 74.4
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1269.6 858 76.2
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1269.6 858 75.4
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 1266.9 858 74.5
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 1266.9 858 74.8
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1265.8 851 76.5
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1263.4 859 74.6
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 1263.4 858 73.9
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1263.1 858 74.7
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1263.1 858 74.7
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1262.3 858 74.7
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1261.5 825 78.3
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 1260.0 858 75.4
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1254.6 858 74.2
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1251.5 858 73.9
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1248.8 858 73.8
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 1239.9 858 73.7
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1238.4 858 74.1
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1227.6 858 72.5
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1227.2 858 72.6
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 1219.1 863 72.7
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1218.8 854 73.3
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 1216.1 863 71.7
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 1215.3 855 72.7
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1214.9 855 73.5
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 1213.4 858 71.6
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 1213.0 884 71.2
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 1212.6 891 71.0
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 1207.2 858 72.1
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 1204.1 860 72.6
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 1201.8 860 72.6
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 1200.7 965 65.9
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 1199.5 857 70.5
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1197.6 853 72.3
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1175.6 888 69.8
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 1151.7 859 67.9
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 1148.7 856 66.4
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 1140.6 913 65.2
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 1119.0 858 66.7
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 1110.1 858 65.0
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1087.8 746 74.7
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 3.5e-299 1031.6 808 68.3
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 1.4e-260 903.3 865 55.7
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 2.6e-249 865.9 886 52.7
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 5.3e-247 858.2 562 74.7
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 8.8e-242 840.9 571 74.1
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 4.8e-240 835.1 562 75.6
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 8.5e-229 797.7 858 48.8
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.5e-225 786.9 890 49.0
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.6e-217 759.6 669 57.0
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 2.2e-208 729.9 482 74.7
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 8.3e-208 728.0 522 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 3.4e-177 626.3 661 50.7
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 1.8e-138 497.7 353 74.2
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.5e-137 494.6 401 68.8
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 3.3e-124 450.3 897 33.0
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 1.1e-119 435.3 275 80.7
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 5.7e-116 422.9 261 78.2
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.6e-110 404.8 276 71.0
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.8e-104 383.6 247 76.9
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.4e-66 258.1 146 93.8
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.3e-46 192.6 117 83.8
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 1.7e-43 182.2 107 86.9
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 8.7e-40 169.9 189 53.4
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 2.8e-38 164.9 676 23.2
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.4e-29 135.2 90 72.2
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.1e-29 134.4 84 75.0
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.0e-28 132.1 82 75.6
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 4.5e-28 131.0 64 95.3
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 5.9e-28 130.6 134 59.0
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 7.2e-26 123.6 121 57.0
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.7e-25 121.7 71 77.5
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 7.7e-20 103.6 57 87.7
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 5.0e-19 100.9 57 86.0
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 6.3e-14 84.0 54 81.5
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 1.7e-11 75.9 63 61.9
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-10 72.4 55 63.6
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.2e-10 71.6 49 73.5
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 1.2e-09 69.7 54 64.8
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-07 62.4 44 65.9


User provided reference genes

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