Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 8.0e-29 129.8 68 100.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 7.7e-24 113.2 62 93.5
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.5e-22 108.2 62 88.7
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.2e-19 99.4 62 82.3
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.6e-19 98.2 62 80.6
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.6e-19 98.2 62 80.6
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 2.2e-18 95.1 62 79.0
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.2e-18 95.1 62 77.4
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 6.3e-18 93.6 62 75.8
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.8e-17 92.0 62 74.2
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.8e-17 92.0 62 74.2
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.8e-17 92.0 62 77.4
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.8e-17 92.0 62 77.4
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.4e-17 91.7 62 77.4
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.2e-16 89.4 62 77.4
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 7.7e-16 86.7 62 71.0
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.7e-15 85.5 62 69.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 3.8e-15 84.3 62 74.2
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-14 82.8 62 64.5
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.9e-14 82.0 62 64.5
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.5e-14 81.6 62 66.1
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 3.2e-14 81.3 62 66.1
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 3.2e-14 81.3 62 67.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 4.2e-14 80.9 62 66.1
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 5.5e-14 80.5 62 64.5
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 5.5e-14 80.5 62 66.1
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.5e-14 80.5 62 62.9
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 9.4e-14 79.7 62 64.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 9.4e-14 79.7 62 64.5
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 9.4e-14 79.7 62 64.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 9.4e-14 79.7 63 66.7
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-13 79.3 62 62.9
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.6e-13 79.0 65 63.1
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.7e-13 78.2 62 62.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.7e-13 78.2 62 62.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.7e-13 77.4 62 67.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-13 77.4 62 67.7
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-13 77.4 62 67.7
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-13 77.4 62 67.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 6.1e-13 77.0 65 60.0
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 6.1e-13 77.0 65 61.5
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 6.1e-13 77.0 62 64.5
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 8.0e-13 76.6 65 60.0
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.0e-12 76.3 62 59.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.0e-12 76.3 62 64.5
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.0e-12 76.3 62 59.7
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.0e-12 76.3 62 61.3
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.4e-12 75.9 62 59.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.8e-12 75.5 62 59.7
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.8e-12 75.5 62 59.7
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.8e-12 75.5 62 59.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.3e-12 75.1 65 58.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 4.0e-12 74.3 65 63.1
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 4.0e-12 74.3 62 59.7
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 5.2e-12 73.9 67 55.2
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 5.2e-12 73.9 62 62.9
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 5.2e-12 73.9 60 63.3
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 5.2e-12 73.9 63 63.5
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 5.2e-12 73.9 65 58.5
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 5.2e-12 73.9 63 65.1
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.8e-12 73.6 65 61.5
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 6.8e-12 73.6 62 59.7
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 8.8e-12 73.2 62 61.3
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 8.8e-12 73.2 65 63.1
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.0e-11 72.0 62 66.1
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.6e-11 71.6 62 59.7
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.6e-11 71.6 62 62.9
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 2.6e-11 71.6 62 61.3
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 2.6e-11 71.6 62 59.7
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.6e-11 71.6 62 59.7
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 3.4e-11 71.2 63 65.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.4e-11 71.2 62 62.9
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.4e-11 71.2 65 58.5
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.4e-11 71.2 65 58.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.4e-11 70.9 65 58.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 5.7e-11 70.5 62 59.7
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 5.7e-11 70.5 65 60.0
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 7.5e-11 70.1 65 61.5
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.8e-11 69.7 74 54.1
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 9.8e-11 69.7 62 62.9
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 8.3e-10 66.6 62 56.5
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 8.3e-10 66.6 62 54.8
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.1e-09 66.2 69 53.6
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.1e-09 66.2 62 56.5
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.1e-09 66.2 62 59.7
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.4e-09 65.9 57 59.6
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.4e-09 65.9 75 50.7
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.4e-09 65.9 67 52.2
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 3.1e-09 64.7 64 51.6
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 3.1e-09 64.7 55 60.0
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.1e-09 64.7 64 53.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.1e-09 64.7 53 64.2
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 4.1e-09 64.3 64 53.1
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.1e-09 64.3 62 58.1
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 4.1e-09 64.3 65 55.4
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.0e-09 63.5 65 53.8
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 7.0e-09 63.5 62 56.5
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 9.1e-09 63.2 49 67.3
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-08 62.8 64 54.7
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.2e-08 62.8 64 54.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.2e-08 62.8 62 53.2
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.2e-08 62.8 62 56.5
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.6e-08 62.4 62 53.2
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-08 62.4 62 53.2
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.6e-08 62.4 62 53.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.6e-08 62.4 62 56.5
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.0e-08 62.0 60 53.3
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.7e-08 61.6 64 54.7
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.7e-08 61.6 64 54.7
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.7e-08 61.6 70 54.3
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 3.5e-08 61.2 64 53.1
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 3.5e-08 61.2 65 56.9
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.5e-08 60.8 64 51.6
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 5.9e-08 60.5 62 53.2
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 5.9e-08 60.5 62 51.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 7.7e-08 60.1 64 53.1
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.7e-07 58.9 63 50.8
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.3e-07 58.5 62 51.6
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-07 58.5 62 51.6
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.8e-07 57.8 65 50.8
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.8e-07 57.8 62 46.8
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 5.0e-07 57.4 64 51.6
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 8.6e-07 56.6 62 54.8
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.5e-06 55.8 62 45.2
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.5e-06 55.8 62 48.4
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 7.2e-06 53.5 62 48.4
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 9.5e-06 53.1 62 46.8


User provided reference genes

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