Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.4e-170 602.8 297 100.0
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 6.7e-165 583.9 297 96.6
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 1.1e-162 576.6 297 95.6
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 3.6e-158 561.6 297 92.6
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 1.0e-157 560.1 297 92.3
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 1.2e-156 556.6 297 91.9
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 7.5e-156 553.9 297 89.9
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 5.0e-152 541.2 297 88.9
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 6.5e-152 540.8 288 90.3
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 7.2e-151 537.3 293 88.7
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 7.2e-151 537.3 293 88.7
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 7.2e-151 537.3 294 89.1
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.8e-149 532.7 287 88.2
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 3.0e-149 531.9 288 87.2
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 8.8e-149 530.4 288 88.2
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.5e-148 529.6 288 87.8
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 3.4e-148 528.5 288 87.5
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 5.7e-148 527.7 288 87.2
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 7.5e-148 527.3 288 87.2
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 9.8e-148 526.9 288 87.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 9.8e-148 526.9 288 87.8
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 1.7e-147 526.2 288 87.2
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 2.2e-147 525.8 290 85.9
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.2e-147 525.8 288 87.5
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 2.2e-147 525.8 288 86.5
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 4.8e-147 524.6 285 88.1
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 4.8e-147 524.6 288 85.8
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 4.8e-147 524.6 287 87.8
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.8e-147 524.6 287 87.8
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 6.3e-147 524.2 288 86.1
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.1e-146 523.5 288 87.5
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.1e-146 523.5 288 86.8
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.4e-146 523.1 288 87.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 3.1e-146 521.9 286 86.7
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 4.1e-146 521.5 288 86.1
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.1e-146 521.5 287 87.1
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 4.1e-146 521.5 288 85.1
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 5.4e-146 521.2 288 85.8
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 5.4e-146 521.2 288 85.8
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 3.5e-145 518.5 288 85.4
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 3.5e-145 518.5 288 84.4
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 1.7e-144 516.2 288 85.4
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 2.3e-144 515.8 288 85.1
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 3.8e-144 515.0 288 84.7
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 3.8e-144 515.0 318 78.9
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 3.8e-144 515.0 287 85.0
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 8.6e-144 513.8 288 84.0
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 1.5e-143 513.1 290 85.2
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.9e-143 512.7 288 86.1
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.3e-143 511.9 284 86.3
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 3.3e-143 511.9 287 83.3
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 4.2e-143 511.5 288 83.3
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 5.5e-143 511.1 286 85.7
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.6e-142 509.6 291 85.2
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.6e-142 509.6 287 86.4
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 4.7e-142 508.1 278 86.0
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 4.7e-142 508.1 288 82.3
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 4.7e-142 508.1 288 83.7
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 6.1e-142 507.7 288 84.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 8.0e-142 507.3 288 83.7
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.0e-141 506.9 288 81.6
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.0e-141 506.9 288 81.6
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.0e-141 506.9 290 84.1
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.0e-141 506.9 288 83.7
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.0e-141 506.9 288 83.0
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 5.2e-141 504.6 288 81.6
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 6.8e-141 504.2 288 83.3
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 6.8e-141 504.2 284 84.9
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 2.0e-140 502.7 288 81.6
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 3.4e-140 501.9 288 80.9
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 5.7e-140 501.1 288 84.0
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 7.5e-140 500.7 288 80.6
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 9.8e-140 500.4 288 81.2
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 9.8e-140 500.4 288 82.6
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.3e-139 500.0 288 82.3
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 1.7e-139 499.6 287 82.9
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 2.8e-139 498.8 288 80.2
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 3.7e-139 498.4 289 80.6
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 3.7e-139 498.4 288 81.2
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.4e-138 496.5 288 81.9
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 5.4e-138 494.6 285 82.5
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 7.0e-138 494.2 288 80.2
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 2.0e-137 492.7 288 79.9
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 4.5e-137 491.5 288 79.5
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 5.9e-137 491.1 288 79.2
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 5.9e-137 491.1 288 78.8
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 5.9e-137 491.1 288 78.8
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 5.9e-137 491.1 288 79.2
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.9e-137 491.1 288 81.6
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 5.9e-137 491.1 272 86.8
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 2.3e-136 489.2 290 79.3
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 2.9e-136 488.8 285 79.3
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 6.6e-136 487.6 272 86.0
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 8.6e-136 487.3 276 84.8
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 5.6e-135 484.6 288 78.8
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.2e-134 483.4 270 85.9
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.1e-134 482.6 287 78.0
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 5.2e-133 478.0 285 79.3
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.5e-132 476.5 287 79.8
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 2.6e-132 475.7 288 78.1
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.9e-131 472.2 288 80.2
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.4e-130 469.2 249 87.6
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 2.4e-130 469.2 288 79.5
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 3.2e-130 468.8 291 77.7
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 4.6e-129 464.9 278 80.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 4.6e-129 464.9 311 74.9
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 1.3e-128 463.4 290 74.8
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 6.6e-128 461.1 290 74.8
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 7.5e-124 447.6 309 70.9
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 4.1e-122 441.8 288 75.7
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 1.7e-120 436.4 283 71.4
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.8e-117 426.4 271 76.0
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 70.5
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.8e-117 424.5 281 70.1
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.7e-112 409.8 267 71.9
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 8.6e-112 407.5 271 69.7
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 3.8e-107 392.1 281 65.1
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 3.1e-101 372.5 221 79.6
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 7.3e-95 351.3 321 59.5
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.2e-90 335.5 183 88.0
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 7.4e-87 324.7 188 82.4
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 1.5e-84 317.0 184 83.2
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 2.1e-81 306.6 283 50.9
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 1.1e-79 300.8 171 84.2
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 6.9e-77 291.6 295 52.2
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 6.9e-77 291.6 294 50.7
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 1.6e-73 280.4 188 69.7
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 4.8e-70 268.9 299 46.8
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.7e-62 243.8 164 76.2
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.7e-55 218.0 222 55.0
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 8.2e-54 214.9 310 42.9
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.1e-53 212.6 222 54.1
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 4.8e-46 189.1 104 83.7
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 7.7e-44 181.8 99 87.9
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.3e-43 181.0 100 86.0
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.0e-41 171.8 95 86.3
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 5.4e-29 132.5 76 84.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.0e-24 116.3 164 42.1
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.3e-22 108.6 95 63.2
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 6.8e-08 62.4 51 54.9
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.5e-07 61.2 40 80.0


User provided reference genes

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