Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 4.7e-85 317.8 155 100.0
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 2.2e-66 255.8 157 86.6
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 2.2e-58 229.2 145 79.3
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 4.1e-57 224.9 145 77.9
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 6.0e-40 167.9 164 61.0
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.7e-39 166.4 143 62.2
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 1.7e-39 166.4 165 60.0
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 2.2e-34 149.4 166 56.6
arahy.Tifrunner.gnm1.ann1.75VKL2 Arachis hypogaea HOM05D013068 ORTHO05D003125 2.6e-27 125.9 178 45.5
arahy.Tifrunner.gnm1.ann1.NDRC00 Arachis hypogaea HOM05D013068 ORTHO05D003125 4.5e-27 125.2 178 44.9
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 8.7e-23 110.9 135 53.3
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.8e-12 76.6 138 45.7
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 1.5e-11 73.6 145 40.0
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 2.6e-11 72.8 152 38.2
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 3.4e-11 72.4 145 40.0
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 4.5e-11 72.0 142 39.4
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.7e-11 71.2 70 55.7
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 7.7e-11 71.2 159 36.5
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.0e-10 70.9 150 37.3
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.0e-10 70.9 154 35.1
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.3e-10 70.5 153 38.6
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.3e-10 70.5 157 38.2
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 1.7e-10 70.1 118 44.1
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 6.5e-10 68.2 41 85.4
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 6.5e-10 68.2 152 37.5
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 8.5e-10 67.8 143 39.9
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 8.5e-10 67.8 143 39.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.1e-09 67.4 133 36.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.4e-09 67.0 117 42.7
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.4e-09 67.0 137 40.1
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.9e-09 66.6 141 35.5
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.9e-09 66.6 138 38.4
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.9e-09 66.6 132 40.2
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 2.5e-09 66.2 78 52.6
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.2e-09 65.9 127 42.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.2e-09 65.9 148 37.2
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 7.2e-09 64.7 94 47.9
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 9.4e-09 64.3 129 37.2
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 9.4e-09 64.3 136 37.5
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 9.4e-09 64.3 63 55.6
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.2e-08 63.9 148 39.9
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.2e-08 63.9 131 41.2
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.2e-08 63.9 156 35.3
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.6e-08 63.5 148 35.8
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.1e-08 63.2 133 38.3
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.1e-08 63.2 140 35.7
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.1e-08 63.2 141 39.7
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 2.1e-08 63.2 127 41.7
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.1e-08 63.2 132 40.2
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 2.7e-08 62.8 147 36.1
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 2.7e-08 62.8 147 36.1
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.7e-08 62.8 134 39.6
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.7e-08 62.8 148 33.8
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.6e-08 62.4 77 50.6
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.6e-08 62.4 151 35.1
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.6e-08 62.4 135 37.8
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.6e-08 62.4 130 35.4
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 3.6e-08 62.4 157 33.1
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.6e-08 62.0 158 36.7
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.6e-08 62.0 138 38.4
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 6.1e-08 61.6 145 37.9
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.1e-08 61.6 121 40.5
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.1e-08 61.6 135 39.3
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 6.1e-08 61.6 139 35.3
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 7.9e-08 61.2 132 37.1
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.9e-08 61.2 144 36.8
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.9e-08 61.2 129 36.4
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 7.9e-08 61.2 155 38.7
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 7.9e-08 61.2 166 34.3
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.9e-08 61.2 133 36.8
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.0e-07 60.8 84 48.8
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 1.0e-07 60.8 132 37.1
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 1.0e-07 60.8 94 44.7
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.0e-07 60.8 122 36.1
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.4e-07 60.5 139 38.1
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-07 60.5 144 38.9
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-07 60.5 144 38.9
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.8e-07 60.1 81 49.4
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.8e-07 60.1 150 36.0
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.3e-07 59.7 138 35.5
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 3.0e-07 59.3 146 35.6
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.0e-07 59.3 135 37.0
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.0e-07 59.3 52 59.6
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.9e-07 58.9 139 37.4
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 3.9e-07 58.9 136 39.0
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.9e-07 58.9 95 43.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 3.9e-07 58.9 133 36.8
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.9e-07 58.9 139 35.3
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 3.9e-07 58.9 146 37.0
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.1e-07 58.5 74 54.1
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 5.1e-07 58.5 52 59.6
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.7e-07 58.2 140 36.4
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 6.7e-07 58.2 138 41.3
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 6.7e-07 58.2 61 55.7
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.7e-07 58.2 138 39.1
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 8.8e-07 57.8 141 34.8
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 8.8e-07 57.8 60 56.7
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.8e-07 57.8 138 36.2
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.5e-06 57.0 42 69.0
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.5e-06 57.0 118 38.1
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.5e-06 57.0 146 31.5
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.0e-06 56.6 75 48.0
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 2.0e-06 56.6 135 37.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.0e-06 56.6 86 48.8
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.0e-06 56.6 73 50.7
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 2.5e-06 56.2 137 35.0
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.5e-06 56.2 73 50.7
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.5e-06 56.2 68 48.5
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 2.5e-06 56.2 74 44.6
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.3e-06 55.8 89 47.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.3e-06 55.8 166 31.3
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.3e-06 55.8 131 37.4
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.3e-06 55.8 131 37.4
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.3e-06 55.8 68 48.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.3e-06 55.8 52 57.7
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 4.3e-06 55.5 163 34.4
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 4.3e-06 55.5 142 33.1
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.3e-06 55.5 166 31.3
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 5.7e-06 55.1 128 32.0
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.7e-06 55.1 140 33.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 5.7e-06 55.1 51 56.9
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 5.7e-06 55.1 52 55.8
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 5.7e-06 55.1 131 34.4
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 7.4e-06 54.7 100 42.0
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.4e-06 54.7 70 51.4
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.4e-06 54.7 99 44.4
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 9.7e-06 54.3 73 49.3
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.7e-06 54.3 129 31.8
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 9.7e-06 54.3 70 47.1
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 9.7e-06 54.3 147 37.4


User provided reference genes

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