Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 5.0e-47 191.0 116 100.0
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 3.9e-44 181.4 116 84.5
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 6.7e-44 180.6 116 83.6
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 3.1e-41 171.8 116 84.5
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.4e-38 162.9 116 75.0
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 3.2e-38 161.8 116 75.9
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 7.2e-38 160.6 117 76.1
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 6.7e-36 154.1 116 73.3
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 7.4e-35 150.6 114 70.2
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.2e-34 149.1 114 69.3
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 1.8e-33 146.0 113 80.5
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 5.9e-32 141.0 107 70.1
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 6.7e-28 127.5 73 86.3
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 7.7e-24 114.0 104 59.6
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.2e-23 112.5 110 53.6
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 6.5e-23 110.9 112 58.0
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 1.1e-22 110.2 107 57.0
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.1e-22 110.2 107 57.0
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 2.5e-22 109.0 110 58.2
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 2.5e-22 109.0 99 61.6
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 2.5e-22 109.0 99 61.6
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.5e-22 109.0 108 60.2
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 3.2e-22 108.6 101 59.4
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 4.2e-22 108.2 112 53.6
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 5.5e-22 107.8 115 54.8
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 7.2e-22 107.5 110 56.4
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.2e-21 106.7 110 52.7
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.2e-21 106.7 110 52.7
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 1.6e-21 106.3 99 60.6
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.6e-21 106.3 106 55.7
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 2.1e-21 105.9 106 55.7
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 4.7e-21 104.8 99 59.6
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-21 104.0 110 53.6
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-21 104.0 110 53.6
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 8.0e-21 104.0 110 53.6
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.0e-21 104.0 114 53.5
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 8.0e-21 104.0 114 53.5
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.0e-20 103.6 101 56.4
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.0e-20 103.6 102 54.9
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.4e-20 103.2 108 55.6
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 1.4e-20 103.2 99 56.6
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 1.8e-20 102.8 110 53.6
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.8e-20 102.8 101 55.4
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 5.2e-20 101.3 108 52.8
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 8.8e-20 100.5 99 56.6
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 8.8e-20 100.5 99 56.6
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 3.4e-19 98.6 108 54.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 4.4e-19 98.2 99 52.5
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 5.7e-19 97.8 108 49.1
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 1.3e-18 96.7 99 51.5
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.7e-18 96.3 110 51.8
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.2e-18 95.9 95 55.8
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.8e-18 95.5 111 51.4
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.8e-18 95.5 96 55.2
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 4.8e-18 94.7 107 50.5
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 6.3e-18 94.4 111 49.5
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 6.3e-18 94.4 111 49.5
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 8.3e-18 94.0 116 48.3
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.1e-17 93.6 106 53.8
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.4e-17 93.2 101 51.5
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.4e-17 92.4 105 55.2
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.1e-17 92.0 97 50.5
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 5.3e-17 91.3 103 48.5
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 7.0e-17 90.9 107 52.3
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 9.1e-17 90.5 113 46.0
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 9.1e-17 90.5 98 52.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.2e-16 90.1 111 45.0
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 2.0e-16 89.4 115 46.1
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.7e-16 89.0 115 45.2
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 2.7e-16 89.0 102 50.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.5e-16 88.6 110 47.3
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 3.5e-16 88.6 112 46.4
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.5e-16 88.6 101 50.5
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 7.7e-16 87.4 124 46.0
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 7.7e-16 87.4 99 50.5
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 7.7e-16 87.4 99 50.5
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.3e-15 86.7 99 50.5
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.3e-15 86.7 99 50.5
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.3e-15 86.7 100 49.0
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.7e-15 86.3 114 46.5
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.2e-15 85.9 106 50.0
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.2e-15 85.9 111 43.2
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.9e-15 85.5 104 50.0
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 3.8e-15 85.1 100 50.0
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 3.8e-15 85.1 111 45.0
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 5.0e-15 84.7 99 47.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 6.5e-15 84.3 99 48.5
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 8.5e-15 84.0 102 48.0
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.9e-14 82.8 110 45.5
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.9e-14 82.8 99 48.5
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.2e-14 82.0 109 45.0
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.6e-13 79.7 96 47.9
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 8.0e-13 77.4 106 45.3
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.0e-12 77.0 109 45.9
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.0e-12 77.0 110 44.5
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 8.8e-12 73.9 111 44.1
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 8.8e-12 73.9 111 44.1
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 8.8e-12 73.9 111 44.1
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.0e-11 72.8 105 44.8
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 2.0e-11 72.8 98 42.9
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 2.6e-11 72.4 101 41.6
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 7.5e-11 70.9 103 46.6
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 7.5e-11 70.9 94 46.8
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 9.8e-11 70.5 109 41.3
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 1.3e-10 70.1 111 43.2
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.7e-10 69.7 104 45.2
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.7e-10 68.6 109 43.1
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 45.3
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 43.4
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 43.4
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 43.4
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 43.4
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 3.7e-10 68.6 106 43.4
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 4.8e-10 68.2 64 56.2
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 4.8e-10 68.2 97 44.3
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 4.8e-10 68.2 105 43.8
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.1e-09 67.0 107 43.0
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.1e-09 67.0 91 45.1
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.8e-09 66.2 94 43.6
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 4.1e-09 65.1 114 40.4
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.1e-09 65.1 93 44.1
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 5.4e-09 64.7 110 40.0
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 9.1e-09 63.9 48 66.7
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 1.2e-08 63.5 86 39.5
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 3.5e-08 62.0 108 39.8
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 3.5e-08 62.0 97 40.2
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.1e-06 57.0 67 46.3


User provided reference genes

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