Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 3.2e-24 114.4 62 100.0
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 1.4e-16 89.0 66 84.8
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 4.3e-13 77.4 65 72.3
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 4.3e-13 77.4 65 72.3
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 3.1e-11 71.2 62 62.9
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 4.4e-10 67.4 47 70.2
Phvul.001G043300 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 4.4e-10 67.4 62 71.0
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 1.3e-09 65.9 48 62.5
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.9e-09 64.7 48 60.4
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 6.4e-09 63.5 48 58.3
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 6.4e-09 63.5 48 62.5
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 8.3e-09 63.2 48 60.4
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.3e-09 63.2 48 62.5
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.3e-09 63.2 48 58.3
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.3e-09 63.2 48 62.5
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.1e-08 62.8 46 58.7
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 1.1e-08 62.8 48 60.4
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 1.1e-08 62.8 48 62.5
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 1.9e-08 62.0 49 61.2
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 2.4e-08 61.6 43 65.1
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.2e-08 61.2 45 64.4
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 4.1e-08 60.8 39 69.2
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 5.4e-08 60.5 44 61.4
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 7.1e-08 60.1 44 61.4
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 9.2e-08 59.7 39 69.2
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 9.2e-08 59.7 44 59.1
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 9.2e-08 59.7 44 59.1
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.2e-07 59.3 43 60.5
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.2e-07 59.3 39 66.7
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 2.1e-07 58.5 39 64.1
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 2.1e-07 58.5 39 69.2
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 2.1e-07 58.5 39 66.7
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 3.5e-07 57.8 43 60.5
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 6.0e-07 57.0 47 59.6
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 6.0e-07 57.0 39 66.7
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 6.0e-07 57.0 63 54.0
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 7.8e-07 56.6 42 57.1
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.0e-06 56.2 39 61.5
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 1.3e-06 55.8 53 58.5
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 1.3e-06 55.8 46 63.0
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.3e-06 55.8 46 63.0
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 3.0e-06 54.7 53 62.3
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 3.0e-06 54.7 39 61.5
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 3.0e-06 54.7 48 54.2
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 3.9e-06 54.3 48 60.4
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 3.9e-06 54.3 39 64.1
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 5.1e-06 53.9 48 58.3
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 5.1e-06 53.9 49 51.0
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 5.1e-06 53.9 53 56.6
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 6.6e-06 53.5 44 56.8
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 6.6e-06 53.5 44 52.3
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 8.6e-06 53.1 36 72.2


User provided reference genes

Program Settings