Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.9e-38 161.0 83 100.0
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.0e-33 146.4 83 88.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.2e-32 141.0 83 81.9
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.6e-23 111.3 89 69.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 4.7e-23 110.9 89 69.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 6.1e-23 110.5 89 69.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.0e-23 110.2 78 74.4
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 3.0e-22 108.2 84 69.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 4.0e-22 107.8 81 72.8
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 9.7e-21 103.2 82 64.6
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 9.7e-21 103.2 79 65.8
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 9.7e-21 103.2 81 67.9
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 9.7e-21 103.2 79 65.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-20 102.8 82 64.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.7e-20 102.4 82 63.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.2e-20 102.1 79 64.6
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.2e-20 102.1 82 62.2
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.2e-20 102.1 86 62.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.2e-20 102.1 86 59.3
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.7e-20 101.3 86 62.8
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 6.3e-20 100.5 78 64.1
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 8.2e-20 100.1 80 61.2
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.4e-19 99.4 86 57.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-19 99.4 78 62.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.4e-19 99.4 86 59.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.4e-19 98.6 86 59.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.4e-19 98.6 86 59.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 2.4e-19 98.6 86 59.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.4e-19 98.6 86 59.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.4e-19 98.6 86 59.3
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.1e-19 98.2 83 59.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 4.1e-19 97.8 77 62.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 4.1e-19 97.8 82 61.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 5.3e-19 97.4 78 60.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 5.3e-19 97.4 78 60.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 5.3e-19 97.4 78 60.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 5.3e-19 97.4 78 60.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.3e-19 97.4 82 59.8
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 7.0e-19 97.1 86 59.3
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 7.0e-19 97.1 86 55.8
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.2e-18 96.3 80 62.5
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.2e-18 96.3 86 59.3
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.2e-18 96.3 86 59.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.6e-18 95.9 72 62.5
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.0e-18 95.5 86 55.8
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.0e-18 95.5 77 59.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.0e-18 95.5 80 57.5
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.5e-18 94.7 78 57.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.5e-18 94.7 78 57.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.5e-18 94.7 78 59.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.5e-18 94.7 78 61.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.5e-18 94.7 80 60.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.9e-18 94.0 83 60.2
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 5.9e-18 94.0 86 57.0
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 7.7e-18 93.6 77 57.1
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.7e-17 92.4 83 59.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.7e-17 92.4 83 59.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.7e-17 92.4 82 59.8
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 3.8e-17 91.3 80 58.8
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 5.0e-17 90.9 79 57.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 6.5e-17 90.5 80 56.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 8.5e-17 90.1 75 62.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 8.5e-17 90.1 79 57.0
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.5e-17 90.1 87 56.3
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 8.5e-17 90.1 76 59.2
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 58.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.1e-16 89.7 80 56.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.5e-16 89.4 80 55.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 3.2e-16 88.2 83 57.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.2e-16 88.2 79 54.4
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 3.2e-16 88.2 86 55.8
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.5e-16 87.4 74 64.9
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 5.5e-16 87.4 80 52.5
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 7.2e-16 87.0 70 60.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-15 85.9 85 52.9
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-15 85.9 81 53.1
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.6e-15 85.9 77 62.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.1e-15 85.5 80 53.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 2.7e-15 85.1 80 52.5
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.6e-15 84.7 75 58.7
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.7e-15 84.3 82 52.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.7e-15 84.3 82 52.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 6.1e-15 84.0 79 53.2
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.1e-15 84.0 82 53.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.0e-14 83.2 77 51.9
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.8e-14 82.4 83 51.8
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 2.3e-14 82.0 78 51.3
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.3e-14 82.0 75 58.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.3e-14 82.0 82 54.9
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 4.0e-14 81.3 69 56.5
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.0e-14 81.3 75 56.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 5.2e-14 80.9 82 50.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.5e-13 79.3 82 52.4
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.4e-13 78.2 77 54.5
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 9.8e-13 76.6 81 53.1
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 9.8e-13 76.6 80 48.8
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 9.8e-13 76.6 70 55.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-12 75.9 76 53.9
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-12 75.9 76 53.9
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.2e-12 75.5 82 50.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.8e-12 75.1 81 49.4
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.7e-12 74.7 79 51.9
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.7e-12 74.7 65 58.5
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.8e-12 74.3 71 53.5
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.3e-12 73.9 76 53.9
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 6.3e-12 73.9 70 54.3
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 8.3e-12 73.6 80 45.0
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.1e-11 73.2 65 58.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.8e-11 72.4 83 47.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.4e-11 72.0 83 47.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.1e-11 71.2 78 50.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 5.4e-11 70.9 86 43.0
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 7.0e-11 70.5 85 47.1
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.2e-10 69.7 73 54.8
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.6e-10 69.3 70 54.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.0e-10 68.9 65 53.8
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.7e-10 68.6 64 57.8
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-10 67.8 79 46.8
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 5.9e-10 67.4 65 49.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 5.9e-10 67.4 72 51.4
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 5.9e-10 67.4 62 56.5
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.7e-10 67.0 80 47.5
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-09 66.6 64 53.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-09 66.6 64 53.1
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.0e-09 66.6 72 47.2
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.0e-09 66.6 69 47.8
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-09 65.9 63 55.6
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.2e-09 65.5 65 52.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-09 65.1 67 50.7
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.9e-09 65.1 74 44.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.9e-09 65.1 65 50.8
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 3.8e-09 64.7 75 48.0
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 5.0e-09 64.3 69 46.4
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 5.0e-09 64.3 82 48.8
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.1e-08 63.2 69 46.4
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.5e-08 62.8 81 48.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.5e-08 62.8 62 50.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-08 62.0 65 47.7
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-08 62.0 65 47.7
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.5e-08 62.0 65 47.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.2e-08 61.2 62 56.5
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 5.5e-08 60.8 67 49.3
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.2e-08 60.5 84 42.9
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 9.4e-08 60.1 62 53.2
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-07 58.5 66 53.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-07 58.5 66 53.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-07 58.5 66 53.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.7e-07 58.5 66 53.0
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.7e-07 58.5 66 53.0
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.7e-07 58.5 72 43.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 6.1e-07 57.4 69 44.9
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 6.1e-07 57.4 69 44.9
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 6.1e-07 57.4 71 40.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.8e-06 55.8 73 50.7
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.8e-06 55.8 61 36.1
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 2.3e-06 55.5 72 45.8
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 4.0e-06 54.7 67 44.8
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 5.2e-06 54.3 66 50.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.2e-06 54.3 45 60.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.8e-06 53.9 67 41.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.8e-06 53.5 64 46.9


User provided reference genes

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