Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 7.2e-93 344.0 182 100.0
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.2e-69 265.0 181 79.6
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.4e-64 250.0 181 74.6
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 5.9e-55 218.0 182 67.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 8.9e-43 177.6 163 60.1
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.1e-40 170.6 181 54.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-36 157.1 207 47.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-36 156.4 207 48.3
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-36 156.4 207 48.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 4.7e-36 155.2 152 57.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.2e-35 151.8 207 47.8
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 6.4e-33 144.8 208 42.8
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.7e-31 139.4 196 42.9
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.5e-31 139.0 196 42.3
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 3.5e-31 139.0 195 42.1
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.3e-30 136.3 212 42.9
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.3e-30 136.3 213 41.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 6.6e-30 134.8 196 40.3
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 6.6e-30 134.8 203 40.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.5e-29 133.7 213 41.8
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 3.3e-29 132.5 204 40.7
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 4.3e-29 132.1 196 40.3
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 5.6e-29 131.7 196 42.9
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 7.3e-29 131.3 208 39.9
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.6e-28 130.2 197 42.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.6e-28 130.2 197 41.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.1e-27 127.5 197 41.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.4e-27 126.3 196 41.3
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 6.9e-27 124.8 197 39.6
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.2e-26 124.0 197 40.6
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 2.6e-26 122.9 196 41.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.6e-26 122.9 197 40.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.4e-26 122.5 197 38.1
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.4e-26 122.5 209 37.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.6e-26 121.3 199 37.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.8e-25 119.0 208 38.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 4.9e-25 118.6 197 38.6
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.9e-25 118.6 197 38.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.4e-25 118.2 197 38.6
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 6.4e-25 118.2 197 36.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-24 117.5 210 37.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.4e-24 117.1 198 38.4
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.4e-24 117.1 180 41.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.9e-24 116.7 198 38.4
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.2e-24 115.9 205 38.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.2e-24 115.5 197 39.1
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 4.2e-24 115.5 196 34.7
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.4e-24 115.2 195 38.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.1e-24 114.8 210 36.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.2e-23 114.0 185 38.9
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.6e-23 113.6 204 36.8
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.6e-23 113.6 197 38.1
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 2.7e-23 112.8 198 36.4
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.7e-23 112.8 208 38.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.7e-23 112.8 196 38.3
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 4.6e-23 112.1 202 38.1
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 4.6e-23 112.1 207 35.7
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.6e-23 112.1 178 37.6
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.0e-22 110.9 208 37.5
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.0e-22 110.9 196 37.2
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-22 110.5 201 36.8
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-22 110.5 201 36.8
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.3e-22 110.5 208 37.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.3e-22 109.8 202 37.1
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.1e-22 108.6 203 33.0
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 6.6e-22 108.2 196 35.7
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 6.6e-22 108.2 198 33.3
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 8.7e-22 107.8 197 33.5
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 8.7e-22 107.8 200 34.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-21 107.5 196 33.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.1e-21 107.5 196 33.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.1e-21 107.5 200 35.5
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-21 107.5 195 37.4
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.1e-21 107.5 200 36.5
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.5e-21 107.1 202 37.1
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.9e-21 106.7 207 32.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-21 106.7 200 37.5
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.5e-21 106.3 200 37.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 3.3e-21 105.9 194 35.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 5.6e-21 105.1 163 39.3
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 7.3e-21 104.8 200 34.5
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.3e-20 104.0 208 33.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.6e-20 103.6 199 37.2
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-20 103.6 198 33.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.1e-20 103.2 195 36.4
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.6e-20 102.4 165 41.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 4.8e-20 102.1 208 36.1
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 4.8e-20 102.1 208 36.1
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 4.8e-20 102.1 199 35.7
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 4.8e-20 102.1 196 32.7
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 6.2e-20 101.7 201 34.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 6.2e-20 101.7 199 33.2
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-19 100.9 205 35.6
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.4e-19 100.5 205 35.6
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.8e-19 100.1 198 33.8
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 2.4e-19 99.8 208 35.6
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.4e-19 99.8 208 32.7
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.1e-19 99.4 182 37.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 9.0e-19 97.8 196 33.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.2e-18 97.4 208 35.1
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-18 97.4 191 36.6
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 3.4e-18 95.9 90 47.8
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.4e-18 95.9 199 32.7
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 5.8e-18 95.1 186 33.9
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 7.6e-18 94.7 174 43.1
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 7.6e-18 94.7 220 30.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 9.9e-18 94.4 198 34.8
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.2e-17 93.2 201 35.3
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.2e-17 93.2 197 32.0
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.2e-17 93.2 203 31.5
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.9e-17 92.8 198 31.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 6.4e-17 91.7 185 33.0
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 8.4e-17 91.3 149 38.3
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 8.4e-17 91.3 198 30.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.1e-16 90.9 175 36.6
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.4e-16 90.5 185 32.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.4e-16 90.5 222 29.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-16 90.1 198 30.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.9e-16 90.1 198 30.3
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.4e-16 89.7 196 32.1
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 5.4e-16 88.6 222 29.7
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.7e-15 86.3 205 29.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.0e-14 82.8 197 29.4
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.9e-13 80.1 183 30.1
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.9e-13 80.1 198 31.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 5.3e-11 72.0 194 27.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.0e-10 70.1 184 31.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 7.6e-10 68.2 198 27.3
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.9e-09 66.2 192 30.2
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.9e-08 63.5 94 31.9
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.2e-08 62.4 50 58.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.2e-07 60.8 89 33.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.6e-07 58.9 68 39.7
arahy.Tifrunner.gnm1.ann1.RJ1WNK Arachis hypogaea HOM05D004800 ORTHO05D005842 7.9e-07 58.2 77 51.9
Ca_13064_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.3e-06 57.4 62 58.1
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.9e-06 55.8 93 31.2
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 5.1e-06 55.5 69 37.7
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 8.7e-06 54.7 110 31.8


User provided reference genes

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