Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 0.0e+00 1320.8 976 100.0
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 0.0e+00 1099.0 984 85.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 0.0e+00 1077.8 983 84.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.3e-307 1058.9 836 96.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 7.3e-293 1010.7 920 85.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.2e-288 995.3 932 84.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 9.3e-280 967.2 896 85.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.1e-279 966.1 915 83.8
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.0e-278 962.2 930 80.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-274 949.5 872 85.4
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.6e-268 929.9 975 75.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.3e-259 898.3 903 79.1
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.4e-243 847.0 914 72.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 3.5e-242 842.4 901 75.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.9e-241 839.3 911 75.7
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.9e-240 836.6 918 71.8
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.7e-239 832.8 911 74.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.9e-238 828.9 932 74.9
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.7e-237 825.1 917 71.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 3.7e-236 822.4 877 76.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 4.1e-235 818.9 826 80.8
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 9.1e-235 817.8 906 74.4
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.2e-234 817.4 918 76.0
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.5e-232 810.4 826 82.9
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.2e-232 809.3 917 72.4
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.6e-231 805.8 914 76.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 4.7e-231 805.4 919 74.2
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.6e-229 799.7 903 66.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.7e-229 798.5 912 72.6
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.0e-226 790.0 928 73.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.5e-226 788.9 932 68.6
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.7e-223 778.9 998 66.9
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-222 777.7 896 72.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.3e-222 776.5 893 75.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.0e-222 775.8 915 74.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 6.8e-222 775.0 899 75.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-221 771.9 893 75.6
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.2e-220 770.0 916 73.9
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.8e-220 769.6 916 73.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.8e-219 766.9 914 68.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.5e-218 762.7 817 71.5
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-217 761.1 910 65.3
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.8e-217 759.2 915 72.8
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 5.0e-217 758.8 827 78.4
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 6.6e-217 758.4 918 73.6
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.5e-216 757.3 914 72.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 4.2e-216 755.7 955 64.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.2e-216 755.7 924 63.4
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-215 754.2 916 71.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.8e-215 753.1 898 73.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.0e-215 751.5 913 70.9
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 5.2e-214 748.8 909 71.4
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.9e-214 748.0 913 73.2
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.5e-213 745.0 911 71.4
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-211 741.1 928 66.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.5e-210 736.1 914 69.8
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.5e-210 736.1 821 75.3
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.9e-210 735.3 924 71.9
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.7e-209 733.8 802 67.8
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 2.9e-209 733.0 915 71.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.0e-209 732.3 906 73.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.9e-208 730.3 921 71.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.1e-207 726.9 895 71.2
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.8e-207 726.5 823 75.2
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 6.1e-207 725.3 921 63.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.0e-206 724.5 819 72.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 4.0e-206 722.6 912 70.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 8.9e-206 721.5 831 78.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.2e-205 721.1 916 70.7
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.4e-203 714.1 819 70.9
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 4.1e-203 712.6 826 73.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 9.2e-203 711.4 815 69.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.0e-202 710.3 819 71.7
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 6.0e-202 708.8 792 73.6
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.7e-201 707.2 897 70.3
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.7e-201 707.2 815 69.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.3e-201 706.8 893 71.3
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 8.6e-201 704.9 908 67.5
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.6e-199 700.7 820 74.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.4e-198 697.6 772 76.7
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.4e-198 697.6 822 74.1
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.0e-197 693.7 890 69.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 5.8e-197 692.2 888 70.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 9.8e-197 691.4 851 71.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.7e-196 689.5 922 70.3
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 6.4e-196 688.7 804 71.6
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.6e-194 684.1 813 73.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.6e-194 682.6 825 74.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 6.0e-194 682.2 919 68.8
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 8.6e-193 678.3 829 70.7
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 5.6e-192 675.6 775 71.4
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 9.5e-192 674.9 830 73.9
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 6.8e-190 668.7 913 66.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.9e-188 662.5 891 67.3
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.4e-188 662.1 913 62.7
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.4e-187 660.2 912 67.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 4.1e-187 659.4 911 67.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-185 654.4 886 67.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.3e-185 654.4 919 61.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-185 654.1 908 67.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 5.1e-185 652.5 806 64.8
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.5e-184 650.2 911 65.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 3.3e-184 649.8 885 68.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 4.3e-184 649.4 885 68.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-183 647.9 904 67.0
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.8e-183 646.7 795 72.2
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 4.0e-182 642.9 897 67.0
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 5.2e-182 642.5 883 63.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 6.8e-182 642.1 909 65.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.6e-181 640.2 886 67.9
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.4e-181 639.4 823 71.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 3.8e-180 636.3 812 72.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.4e-179 633.6 908 66.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.7e-178 630.2 910 65.7
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.7e-178 630.2 871 56.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-176 623.6 913 65.7
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.6e-175 620.9 741 76.9
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 8.1e-175 618.6 911 64.5
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.5e-173 614.4 911 65.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.2e-172 610.5 911 60.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.5e-170 603.2 897 62.9
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.3e-169 600.5 823 67.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-168 597.8 806 64.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 4.8e-167 592.8 806 63.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 4.8e-167 592.8 806 63.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 4.0e-166 589.7 807 64.2
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.0e-165 587.4 829 65.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.6e-165 587.0 846 59.2
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-164 584.3 844 62.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.8e-159 566.2 835 68.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.4e-158 563.9 825 65.2
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-157 561.6 740 66.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.3e-156 558.1 839 56.4
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.5e-155 553.9 807 62.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.2e-155 553.1 689 78.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-154 551.6 881 58.1
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.7e-154 550.4 881 58.3
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-150 538.5 806 62.2
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.3e-148 531.6 814 63.4
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-147 528.5 807 61.3
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.3e-142 509.6 689 67.2
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.2e-139 500.0 749 63.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.5e-136 491.5 796 51.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.9e-134 482.6 906 52.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.7e-128 462.2 921 50.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.2e-127 461.1 852 48.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-126 458.8 651 76.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.5e-125 453.4 685 61.6
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.7e-122 444.1 805 53.5
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.0e-122 442.6 843 58.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.4e-112 410.2 925 47.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.7e-109 399.4 645 74.9
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.1e-102 379.0 945 49.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.2e-99 366.3 404 61.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.8e-98 364.4 449 70.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 8.0e-98 362.8 746 51.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.0e-96 358.2 814 36.2
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.9e-91 341.7 648 58.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 3.3e-91 340.9 459 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 8.9e-89 332.8 595 63.5
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-84 318.2 1298 29.5
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.3e-76 292.4 420 50.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 5.2e-73 280.4 272 68.4
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-68 265.4 188 73.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.3e-67 261.2 311 79.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 6.4e-47 193.7 232 50.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.7e-37 161.8 207 44.9
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.4e-35 153.7 198 46.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.1e-33 148.3 118 64.4
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 4.1e-33 147.9 82 87.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.6e-29 134.4 120 65.0
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.7e-26 124.8 113 57.5
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.9e-20 104.8 66 81.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.5e-19 102.1 239 79.5
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.4e-14 86.3 193 36.8
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.6e-13 81.6 63 63.5
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 5.3e-09 67.8 210 26.7


User provided reference genes

Program Settings