Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 4.7e-30 134.0 76 100.0
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 4.0e-29 131.0 76 97.4
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 1.2e-20 102.8 76 78.9
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 1.4e-18 95.9 76 72.4
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 4.1e-18 94.4 75 74.7
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 5.4e-18 94.0 77 75.3
TPR.G5610 Trifolium pratense HOM05D002160 ORTHO05D002012 5.4e-18 94.0 73 75.3
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.1e-18 93.6 74 67.6
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.5e-17 91.3 77 76.6
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 4.6e-17 90.9 76 69.7
Glyma.03G082100 Glycine max HOM05D002160 ORTHO05D002012 1.3e-16 89.4 76 78.9
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 3.9e-16 87.8 53 75.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.9e-15 85.5 51 76.5
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 5.6e-15 84.0 54 74.1
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 5.6e-15 84.0 54 74.1
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 5.6e-15 84.0 53 73.6
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 5.6e-15 84.0 53 73.6
Phvul.L001645 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 5.6e-15 84.0 74 70.3
Phvul.L001745 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 5.6e-15 84.0 74 70.3
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 1.6e-14 82.4 76 68.4
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.8e-14 81.6 53 69.8
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 8.1e-14 80.1 53 67.9
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 8.1e-14 80.1 53 69.8
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 8.1e-14 80.1 47 74.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-13 79.7 76 52.6
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.8e-13 79.0 53 71.7
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 1.8e-13 79.0 53 69.8
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.8e-13 79.0 53 67.9
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 3.1e-13 78.2 46 73.9
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.0e-13 77.8 53 71.7
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 4.0e-13 77.8 76 68.4
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 5.2e-13 77.4 75 65.3
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 5.2e-13 77.4 53 64.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 6.8e-13 77.0 53 71.7
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 8.9e-13 76.6 53 69.8
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 8.9e-13 76.6 53 66.0
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 1.5e-12 75.9 53 66.0
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.5e-12 75.9 53 67.9
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.0e-12 75.5 80 66.2
Lj3g0006632 Lotus japonicus HOM05D002160 ORTHO05D002012 2.0e-12 75.5 76 65.8
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.6e-12 75.1 53 66.0
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 4.4e-12 74.3 75 61.3
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 5.8e-12 73.9 80 65.0
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.6e-12 73.6 74 55.4
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.3e-11 72.8 83 62.7
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.7e-11 72.4 54 64.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.7e-11 72.4 54 64.8
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.7e-11 72.4 53 69.8
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.2e-11 72.0 54 68.5
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.2e-11 72.0 53 64.2
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.9e-11 71.6 53 62.3
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.8e-11 71.2 53 62.3
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 3.8e-11 71.2 55 61.8
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.8e-11 71.2 53 67.9
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.9e-11 70.9 53 67.9
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 6.4e-11 70.5 53 62.3
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 8.4e-11 70.1 51 64.7
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 8.4e-11 70.1 56 64.3
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 8.4e-11 70.1 75 58.7
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 1.1e-10 69.7 79 49.4
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.1e-10 69.7 54 66.7
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.1e-10 69.7 54 64.8
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.4e-10 69.3 53 66.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 1.4e-10 69.3 76 60.5
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.9e-10 68.9 51 62.7
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.4e-10 68.6 78 60.3
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.4e-10 68.6 53 60.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.4e-10 68.6 80 58.8
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.2e-10 68.2 76 50.0
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 4.1e-10 67.8 54 61.1
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 4.1e-10 67.8 54 61.1
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 4.1e-10 67.8 54 64.8
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-10 67.8 58 62.1
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 4.1e-10 67.8 75 57.3
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 4.1e-10 67.8 53 60.4
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 5.4e-10 67.4 46 65.2
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 5.4e-10 67.4 53 62.3
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 7.1e-10 67.0 54 63.0
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 7.1e-10 67.0 72 61.1
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 7.1e-10 67.0 54 63.0
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-09 66.2 79 51.9
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-09 65.9 53 58.5
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-09 65.9 71 57.7
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.6e-09 65.9 76 51.3
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.1e-09 65.5 71 57.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.1e-09 65.5 54 63.0
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 2.1e-09 65.5 78 52.6
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.1e-09 65.5 80 56.2
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.7e-09 65.1 75 60.0
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.7e-09 65.1 83 65.1
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-09 64.7 74 56.8
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.5e-09 64.7 74 56.8
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 3.5e-09 64.7 57 56.1
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 6.0e-09 63.9 72 59.7
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.0e-09 63.9 74 56.8
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.0e-09 63.9 80 57.5
Phvul.010G009500 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 7.8e-09 63.5 75 61.3
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 7.8e-09 63.5 72 58.3
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.0e-08 63.2 53 64.2
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.3e-08 62.8 76 57.9
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.3e-08 62.8 54 63.0
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.3e-08 62.8 82 58.5
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.3e-08 62.8 48 62.5
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 1.7e-08 62.4 53 64.2
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.7e-08 62.4 51 54.9
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 3.0e-08 61.6 49 65.3
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 3.9e-08 61.2 55 47.3
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.9e-08 61.2 74 55.4
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.9e-08 61.2 53 64.2
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 3.9e-08 61.2 83 61.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 5.1e-08 60.8 53 56.6
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.6e-08 60.5 76 47.4
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 6.6e-08 60.5 54 57.4
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 8.7e-08 60.1 76 47.4
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 8.7e-08 60.1 51 54.9
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-07 59.7 76 47.4
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.1e-07 59.7 76 47.4
Lalb_Chr13g0290951 Lupinus albus HOM05D002160 ORTHO05D002012 1.1e-07 59.7 76 61.8
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.9e-07 58.9 53 56.6
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.9e-07 58.9 53 56.6
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.3e-07 58.2 55 56.4
TPR.G5642 Trifolium pratense HOM05D002160 ORTHO05D002012 3.3e-07 58.2 76 60.5
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 4.3e-07 57.8 52 53.8
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.3e-07 57.8 78 57.7
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.3e-07 57.8 53 52.8
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 5.6e-07 57.4 51 52.9
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 7.3e-07 57.0 76 44.7
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 7.3e-07 57.0 76 44.7
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 7.3e-07 57.0 76 44.7
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 7.3e-07 57.0 76 44.7
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 7.3e-07 57.0 52 50.0
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 9.6e-07 56.6 54 59.3
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 9.6e-07 56.6 54 59.3
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 9.6e-07 56.6 54 59.3
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 9.6e-07 56.6 49 57.1
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 9.6e-07 56.6 46 58.7
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.2e-06 56.2 76 47.4
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.2e-06 56.2 75 44.0
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 1.2e-06 56.2 46 56.5
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 2.1e-06 55.5 76 46.1
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-06 55.5 76 46.1
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.1e-06 55.5 64 48.4
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.8e-06 55.1 76 56.6
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 3.6e-06 54.7 72 45.8
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 3.6e-06 54.7 49 59.2
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.6e-06 54.7 75 50.7
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 3.6e-06 54.7 54 59.3
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 3.6e-06 54.7 77 53.2
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 3.6e-06 54.7 77 53.2
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 3.6e-06 54.7 77 53.2
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.6e-06 54.7 69 46.4
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.6e-06 54.7 47 57.4
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 8.1e-06 53.5 79 53.2
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 8.1e-06 53.5 76 44.7


User provided reference genes

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