Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 3.1e-125 451.8 228 100.0
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 4.9e-107 391.3 228 88.2
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 1.0e-96 357.1 228 79.4
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.6e-89 333.2 229 75.1
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.8e-84 314.7 228 68.0
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 3.5e-81 305.4 230 64.8
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 1.0e-80 303.9 230 64.8
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 3.0e-80 302.4 226 67.7
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 6.9e-77 291.2 233 63.5
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 1.4e-72 276.9 228 64.0
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 7.0e-61 238.0 157 72.0
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 1.3e-54 217.2 165 65.5
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.0e-51 207.6 201 55.2
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.9e-50 203.4 203 52.7
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 4.0e-48 195.7 225 51.1
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 1.2e-47 194.1 205 52.7
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 4.8e-46 188.7 222 46.8
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 9.1e-45 184.5 225 44.0
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 2.0e-44 183.3 157 58.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.7e-44 183.0 220 47.3
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 1.3e-43 180.6 222 44.1
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 3.8e-43 179.1 202 48.0
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 5.0e-43 178.7 195 48.2
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.5e-42 177.2 223 45.3
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.7e-41 172.9 210 45.2
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.2e-39 167.5 232 41.8
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 3.4e-39 166.0 218 44.0
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 7.5e-39 164.9 218 43.6
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.9e-38 162.2 225 41.8
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 3.1e-37 159.5 202 44.6
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 5.4e-37 158.7 222 41.0
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 7.0e-37 158.3 218 42.7
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 7.0e-37 158.3 225 41.3
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.2e-36 157.5 175 47.4
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 1.6e-36 157.1 205 43.4
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 2.0e-36 156.8 220 42.3
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 2.7e-36 156.4 157 49.7
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 3.5e-36 156.0 215 42.8
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 5.9e-36 155.2 176 46.6
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 1.7e-35 153.7 231 41.6
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 2.3e-35 153.3 213 39.9
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.8e-35 152.5 216 42.6
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 3.8e-35 152.5 220 41.4
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 8.6e-35 151.4 191 44.0
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.5e-34 149.8 221 42.1
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 3.3e-34 149.4 206 40.3
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.6e-33 147.1 208 41.8
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 3.6e-33 146.0 150 45.3
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 3.6e-33 146.0 210 38.6
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 1.0e-32 144.4 218 40.8
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.0e-32 144.4 208 41.3
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.4e-32 144.1 208 41.8
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 3.0e-32 142.9 203 39.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 5.2e-32 142.1 188 43.1
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 8.9e-32 141.4 217 38.7
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.3e-30 137.5 208 41.3
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.3e-30 137.5 208 40.9
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 2.2e-30 136.7 154 44.8
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 2.2e-30 136.7 216 39.4
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 2.4e-29 133.3 203 38.4
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 7.8e-28 128.3 208 37.0
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 8.6e-27 124.8 230 36.5
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 8.6e-27 124.8 140 44.3
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 1.8e-24 117.1 135 46.7
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.2e-23 114.4 192 35.9
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 9.8e-23 111.3 158 41.8
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 3.5e-20 102.8 165 37.0
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 1.1e-18 97.8 138 41.3
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.2e-17 94.4 187 33.7
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 6.2e-17 92.0 98 42.9
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.3e-16 90.1 159 29.6
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.5e-15 87.4 184 28.3
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 2.0e-15 87.0 89 49.4
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 5.8e-15 85.5 175 29.1
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 5.8e-15 85.5 166 27.1
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 5.8e-15 85.5 152 30.9
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 7.5e-15 85.1 155 29.7
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 9.8e-15 84.7 193 28.5
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 9.8e-15 84.7 137 31.4
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.3e-14 84.3 156 31.4
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.7e-14 84.0 161 28.6
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.7e-14 84.0 159 29.6
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 2.2e-14 83.6 158 27.2
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 2.9e-14 83.2 128 33.6
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 2.9e-14 83.2 178 29.8
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 3.7e-14 82.8 186 28.0
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 3.7e-14 82.8 159 27.7
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.7e-14 82.8 187 25.1
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 4.9e-14 82.4 190 26.8
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 4.9e-14 82.4 186 27.4
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 4.9e-14 82.4 111 36.0
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.4e-14 82.0 180 28.3
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 8.3e-14 81.6 181 29.8
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 8.3e-14 81.6 181 29.8
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 8.3e-14 81.6 186 28.0
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 8.3e-14 81.6 186 28.0
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 8.3e-14 81.6 161 28.6
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.4e-13 80.9 182 27.5
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.9e-13 80.5 180 27.2
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 2.4e-13 80.1 181 29.3
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 2.4e-13 80.1 181 29.3
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.4e-13 80.1 182 26.9
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.4e-13 80.1 166 28.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 3.2e-13 79.7 181 29.3
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.1e-13 79.3 150 27.3
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 5.4e-13 79.0 161 29.2
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 7.1e-13 78.6 180 27.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 9.2e-13 78.2 134 30.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 9.2e-13 78.2 150 28.7
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.2e-12 77.8 180 27.8
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.6e-12 77.4 158 27.8
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.1e-12 77.0 162 29.6
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 2.7e-12 76.6 160 25.6
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 2.7e-12 76.6 178 25.3
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 3.5e-12 76.3 228 25.0
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 3.5e-12 76.3 171 26.3
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 4.6e-12 75.9 161 26.7
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 4.6e-12 75.9 198 25.8
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 6.0e-12 75.5 158 27.2
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.0e-12 75.5 187 25.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 6.0e-12 75.5 158 28.5
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 6.0e-12 75.5 159 27.7
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 7.8e-12 75.1 178 24.7
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 7.8e-12 75.1 159 26.4
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.0e-11 74.7 151 26.5
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.0e-11 74.7 133 30.8
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.0e-11 74.7 183 27.3
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.3e-11 74.3 158 27.2
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.3e-11 74.3 186 27.4
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.7e-11 73.9 229 24.5
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.7e-11 73.9 140 30.7
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 2.3e-11 73.6 155 26.5
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.3e-11 73.6 159 25.8
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.3e-11 73.6 133 30.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.1e-11 72.4 134 26.9
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 8.6e-11 71.6 159 25.2
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-10 71.2 169 25.4
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.1e-10 71.2 164 26.8
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.9e-10 70.5 172 25.6
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.9e-10 70.5 135 25.9
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 2.5e-10 70.1 135 27.4
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 2.5e-10 70.1 141 30.5
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 5.6e-10 68.9 158 27.2
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 9.5e-10 68.2 161 26.7
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 9.5e-10 68.2 158 25.9
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.6e-09 67.4 157 25.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.6e-09 67.4 159 23.9
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.1e-09 67.0 161 26.7
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 2.8e-09 66.6 182 22.5
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 2.8e-09 66.6 182 22.5
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.6e-09 66.2 159 23.3
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 6.2e-09 65.5 135 24.4
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 6.2e-09 65.5 182 22.5
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.8e-08 63.9 159 24.5
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 3.1e-08 63.2 187 25.1
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 3.1e-08 63.2 151 24.5
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.7e-06 57.4 134 24.6


User provided reference genes

Program Settings