Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 3.9e-79 298.1 155 100.0
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 6.8e-68 260.8 157 89.8
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 6.4e-58 227.6 159 75.5
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 2.3e-55 219.2 159 71.7
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 2.1e-40 169.5 157 59.2
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 1.7e-39 166.4 145 60.0
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.9e-38 162.9 153 56.9
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 7.9e-32 141.0 135 58.5
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 2.5e-30 136.0 154 52.6
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 1.0e-26 124.0 178 52.2
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 2.7e-24 115.9 196 47.4
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 4.8e-21 105.1 151 41.7
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 6.2e-21 104.8 149 43.0
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 3.1e-20 102.4 144 47.2
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 3.1e-20 102.4 155 40.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.9e-20 101.3 148 46.6
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 3.4e-19 99.0 146 43.2
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.6e-19 97.8 144 44.4
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 8.4e-18 94.4 146 44.5
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.1e-17 94.0 142 40.8
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.2e-17 92.4 149 45.0
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.1e-17 91.3 148 42.6
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.2e-16 90.5 164 36.6
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.1e-16 89.7 145 43.4
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.5e-16 89.0 146 40.4
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.6e-16 88.6 150 39.3
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 6.1e-16 88.2 148 37.2
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.0e-15 87.4 180 35.0
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 5.1e-15 85.1 145 39.3
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 6.7e-15 84.7 149 39.6
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 8.7e-15 84.3 151 39.1
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.1e-14 84.0 150 40.0
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-14 82.8 156 37.2
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 2.5e-14 82.8 147 38.8
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 4.3e-14 82.0 144 37.5
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.3e-14 82.0 144 38.2
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.7e-14 81.6 156 37.2
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.4e-14 81.3 169 35.5
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 7.4e-14 81.3 150 37.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 7.4e-14 81.3 146 38.4
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.4e-14 81.3 166 34.3
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 7.4e-14 81.3 144 42.4
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 9.7e-14 80.9 166 34.3
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.8e-13 79.3 148 39.2
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.8e-13 79.3 156 36.5
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.7e-13 79.0 166 33.7
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 4.8e-13 78.6 148 39.2
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 6.3e-13 78.2 151 35.8
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 8.2e-13 77.8 88 48.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.1e-12 77.4 155 40.0
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.8e-12 76.6 145 35.2
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.8e-12 76.6 144 38.9
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 3.1e-12 75.9 152 37.5
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 4.1e-12 75.5 153 37.3
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 4.1e-12 75.5 161 32.3
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 6.9e-12 74.7 153 29.4
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.2e-11 73.9 149 39.6
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.5e-11 73.6 149 41.6
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 3.4e-11 72.4 154 33.1
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 5.9e-11 71.6 164 34.1
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.9e-11 71.6 164 34.1
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.9e-11 71.6 147 32.0
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.9e-11 71.6 147 32.0
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 7.7e-11 71.2 135 38.5
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 7.7e-11 71.2 160 35.0
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 7.7e-11 71.2 141 31.2
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.0e-10 70.9 144 34.7
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.0e-10 70.9 122 39.3
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.3e-10 70.5 142 34.5
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.7e-10 70.1 152 30.9
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.7e-10 70.1 142 32.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.9e-10 69.3 152 34.9
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.8e-10 68.9 104 40.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 5.0e-10 68.6 153 32.0
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 5.0e-10 68.6 158 34.2
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 6.5e-10 68.2 155 36.8
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 8.5e-10 67.8 142 33.8
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.4e-09 67.0 102 39.2
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.4e-09 67.0 145 34.5
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.2e-09 65.9 141 34.8
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 3.2e-09 65.9 127 33.9
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-09 65.9 145 34.5
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.2e-09 65.9 145 34.5
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 4.2e-09 65.5 145 32.4
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 4.2e-09 65.5 122 41.0
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.2e-09 64.7 146 34.9
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 7.2e-09 64.7 147 31.3
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.4e-09 64.3 146 34.9
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.6e-08 63.5 147 34.7
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.7e-08 62.8 144 33.3
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.6e-08 62.4 150 36.7
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.4e-07 60.5 163 30.7
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-07 60.1 145 34.5
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 2.3e-07 59.7 148 33.8
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.0e-07 59.3 149 34.2
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 3.9e-07 58.9 147 33.3
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 5.1e-07 58.5 145 31.7
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.7e-07 58.2 145 36.6
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.7e-07 58.2 145 34.5
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 8.8e-07 57.8 156 30.8
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 8.8e-07 57.8 144 31.2
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-06 57.0 155 31.0
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 2.5e-06 56.2 127 31.5
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.5e-06 56.2 144 29.9
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 4.3e-06 55.5 90 37.8
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 5.7e-06 55.1 88 38.6
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.4e-06 54.7 145 35.9
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.4e-06 54.7 148 27.7


User provided reference genes

Program Settings