Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.4e-63 246.1 125 100.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.6e-54 216.1 125 89.6
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.3e-37 159.8 124 72.6
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.3e-32 140.6 124 62.9
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.9e-28 129.4 123 62.6
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 9.8e-25 117.1 152 52.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 6.4e-24 114.4 114 57.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 6.4e-24 114.4 114 57.0
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 2.7e-22 109.0 114 59.6
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.0e-21 107.1 122 50.8
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 2.3e-21 105.9 122 57.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.0e-21 105.5 119 55.5
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 6.6e-21 104.4 113 56.6
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 8.6e-21 104.0 119 52.9
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.9e-20 102.8 124 51.6
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 5.6e-20 101.3 123 52.8
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.2e-19 100.1 117 50.4
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.6e-19 99.8 121 50.4
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.8e-19 99.0 119 50.4
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 2.8e-19 99.0 125 52.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.6e-19 98.6 115 53.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 6.2e-19 97.8 120 51.7
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.0e-19 97.4 121 53.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.1e-18 97.1 118 50.0
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 4.0e-18 95.1 120 49.2
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 6.8e-18 94.4 118 51.7
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.2e-17 93.6 121 52.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.0e-17 92.8 121 48.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.0e-17 92.8 114 53.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-17 92.4 115 51.3
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.6e-17 92.4 128 49.2
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.8e-17 90.5 120 52.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.2e-16 89.4 115 48.7
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 8.3e-16 87.4 124 48.4
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.1e-15 87.0 120 50.0
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 1.1e-15 87.0 102 48.0
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.9e-15 86.3 113 47.8
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 3.2e-15 85.5 115 46.1
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 4.1e-15 85.1 91 57.1
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 5.4e-15 84.7 123 49.6
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 9.2e-15 84.0 116 47.4
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 9.2e-15 84.0 126 47.6
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 9.2e-15 84.0 123 47.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.6e-14 83.2 128 45.3
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.7e-14 82.4 113 48.7
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.5e-14 82.0 123 47.2
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.5e-14 82.0 123 47.2
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 3.5e-14 82.0 121 49.6
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 7.8e-14 80.9 144 43.1
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-13 80.1 123 47.2
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 1.7e-13 79.7 119 45.4
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 1.7e-13 79.7 128 46.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.3e-13 79.3 126 46.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-13 78.6 81 56.8
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.9e-13 78.6 125 48.0
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 5.1e-13 78.2 122 48.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.1e-13 78.2 122 48.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.1e-13 78.2 121 42.1
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.6e-13 77.8 109 50.5
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 8.6e-13 77.4 117 45.3
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.9e-12 76.3 82 57.3
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.3e-12 75.5 124 46.0
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.3e-12 75.1 118 47.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.6e-12 74.7 81 56.8
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 7.3e-12 74.3 120 48.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 7.3e-12 74.3 125 46.4
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-11 73.2 91 50.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.8e-11 72.4 123 43.1
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 3.6e-11 72.0 118 46.6
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.6e-11 72.0 118 46.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.2e-11 71.2 118 45.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.4e-10 70.1 114 45.6
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.1e-10 68.9 110 40.9
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.1e-10 68.9 110 40.9
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.0e-10 68.6 77 57.1
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 5.2e-10 68.2 127 44.1
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.2e-10 68.2 113 46.0
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 5.2e-10 68.2 122 41.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 5.2e-10 68.2 71 57.7
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 8.9e-10 67.4 139 41.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 8.9e-10 67.4 64 60.9
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 71 56.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.5e-09 66.6 76 53.9
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-09 66.6 51 68.6
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.0e-09 66.2 89 46.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.0e-09 66.2 119 44.5
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.6e-09 65.9 109 45.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-09 65.9 56 64.3
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.6e-09 65.9 116 44.8
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.4e-09 65.5 123 42.3
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.4e-09 65.5 74 48.6
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.4e-09 65.1 87 48.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 9.9e-09 63.9 109 42.2
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 9.9e-09 63.9 124 34.7
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.3e-08 63.5 82 53.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.3e-08 63.5 74 52.7
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.3e-08 63.5 74 47.3
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 2.2e-08 62.8 65 58.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-08 62.8 123 39.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.2e-08 62.8 116 39.7
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 2.9e-08 62.4 119 46.2
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.9e-08 62.4 121 38.8
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.7e-08 62.0 75 52.0
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.7e-08 62.0 138 38.4
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 4.9e-08 61.6 52 63.5
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.9e-08 61.6 76 48.7
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.4e-08 61.2 135 40.7
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 8.3e-08 60.8 52 67.3
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 8.3e-08 60.8 118 38.1
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.1e-07 60.5 117 42.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.4e-07 60.1 120 44.2
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 3.2e-07 58.9 120 37.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.1e-07 58.5 57 57.9
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 5.4e-07 58.2 104 41.3
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 5.4e-07 58.2 47 61.7
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 7.1e-07 57.8 119 42.0
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.1e-07 57.8 122 39.3
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.2e-06 57.0 73 49.3
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.6e-06 56.6 69 50.7
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-06 56.6 89 43.8
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.6e-06 56.6 65 50.8
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.7e-06 55.8 69 52.2
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.7e-06 55.8 70 48.6
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.7e-06 55.8 124 36.3
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 3.5e-06 55.5 50 66.0
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.5e-06 55.5 67 46.3
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.5e-06 55.5 65 52.3
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 3.5e-06 55.5 120 39.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 4.6e-06 55.1 67 52.2
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.0e-06 54.7 37 62.2
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 6.0e-06 54.7 153 34.0
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 7.8e-06 54.3 41 68.3
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 7.8e-06 54.3 70 48.6


User provided reference genes

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