Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 2.4e-30 134.8 66 100.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 3.7e-23 110.9 55 96.4
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.1e-22 109.4 55 94.5
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.1e-22 106.3 55 90.9
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 3.3e-19 97.8 55 83.6
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.1e-18 95.1 55 78.2
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.0e-17 91.3 55 70.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 5.2e-17 90.5 55 70.9
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.6e-16 88.2 55 72.7
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 3.4e-16 87.8 55 72.7
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 9.8e-16 86.3 55 70.9
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.2e-15 85.1 55 70.9
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 7.0e-14 80.1 55 67.3
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 7.0e-14 80.1 55 67.3
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.7e-13 78.2 55 63.6
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.3e-12 75.1 55 61.8
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.9e-12 74.7 55 58.2
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.1e-11 72.8 55 56.4
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.5e-11 71.6 53 52.8
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 5.6e-11 70.5 55 54.5
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.3e-11 70.1 55 54.5
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 9.5e-11 69.7 55 56.4
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.2e-10 69.3 55 56.4
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.1e-10 68.6 61 57.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-10 68.2 55 56.4
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-10 68.2 55 56.4
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-10 68.2 55 56.4
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-10 68.2 55 56.4
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-10 68.2 61 59.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 3.6e-10 67.8 55 52.7
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.6e-10 67.8 55 50.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.6e-10 67.8 55 54.5
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.6e-10 67.8 55 54.5
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.6e-10 67.8 54 51.9
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.7e-10 67.4 50 56.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.1e-10 67.0 55 50.9
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.0e-09 66.2 55 47.3
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.4e-09 65.9 55 50.9
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-09 65.9 55 50.9
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-09 65.9 55 50.9
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.4e-09 65.9 55 47.3
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.8e-09 65.5 52 53.8
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.8e-09 65.5 57 63.2
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-09 65.5 64 50.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.1e-09 64.7 55 52.7
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-09 64.7 53 54.7
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-09 64.7 53 54.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.0e-09 64.3 55 49.1
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.2e-09 63.9 55 49.1
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.8e-09 63.5 50 58.0
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 8.9e-09 63.2 55 50.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.2e-08 62.8 55 47.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.5e-08 62.4 55 50.9
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.5e-08 62.4 56 50.0
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-08 62.4 50 54.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 2.0e-08 62.0 55 45.5
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.4e-08 61.2 50 48.0
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 4.4e-08 60.8 54 53.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 5.8e-08 60.5 50 54.0
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.8e-08 60.5 47 55.3
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 5.8e-08 60.5 54 48.1
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.8e-08 60.5 54 48.1
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 7.5e-08 60.1 64 46.9
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 9.8e-08 59.7 54 46.3
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.3e-07 59.3 50 48.0
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.7e-07 58.9 50 48.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-07 58.2 55 43.6
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.9e-07 58.2 47 53.2
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.9e-07 58.2 70 40.0
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.9e-07 58.2 55 41.8
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 2.9e-07 58.2 64 40.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.9e-07 58.2 55 43.6
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 3.7e-07 57.8 59 47.5
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 3.7e-07 57.8 55 41.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.7e-07 57.8 55 47.3
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.7e-07 57.8 47 53.2
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 4.9e-07 57.4 55 41.8
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 8.3e-07 56.6 54 51.9
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.4e-06 55.8 55 43.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.9e-06 55.5 64 40.6
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.9e-06 55.5 64 40.6
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.9e-06 55.5 55 43.6
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.9e-06 55.5 64 39.1
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.9e-06 55.5 55 41.8
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.4e-06 55.1 64 40.6
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.4e-06 55.1 55 45.5
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.1e-06 54.3 64 39.1
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.1e-06 54.3 64 40.6
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 4.1e-06 54.3 55 47.3
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 5.4e-06 53.9 64 40.6


User provided reference genes

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