Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 7.7e-84 313.9 176 100.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 9.7e-79 297.0 176 92.6
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.9e-74 282.7 175 83.4
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.6e-73 279.6 176 83.0
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 2.3e-67 259.2 176 77.3
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 2.3e-67 259.2 176 77.3
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.4e-64 250.0 177 76.8
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.3e-64 249.2 173 76.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 5.2e-64 248.1 156 84.6
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 6.8e-64 247.7 175 75.4
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.4e-61 240.0 153 79.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 3.1e-61 238.8 173 72.8
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 7.0e-61 237.7 175 75.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.2e-60 236.9 174 70.7
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.6e-60 236.5 173 74.0
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-60 236.1 174 71.3
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.0e-60 236.1 172 71.5
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.0e-59 233.8 174 71.3
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-59 233.4 176 70.5
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-59 233.4 176 69.9
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.3e-59 232.6 152 77.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.3e-59 232.6 152 77.6
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.5e-58 229.9 174 69.0
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.6e-58 228.0 173 69.4
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 7.3e-58 227.6 152 73.7
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 6.1e-57 224.6 173 68.8
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 8.0e-57 224.2 173 69.4
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 8.9e-56 220.7 146 74.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.5e-55 219.9 152 75.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.6e-55 219.2 176 65.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 3.4e-55 218.8 149 72.5
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.7e-54 216.5 175 65.7
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.9e-54 215.7 143 76.2
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 3.7e-54 215.3 148 72.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 8.3e-54 214.2 172 68.0
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 8.3e-54 214.2 175 67.4
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.4e-53 212.6 152 69.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 4.1e-53 211.8 175 66.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 4.1e-53 211.8 181 65.2
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.7e-52 209.1 143 74.1
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 3.0e-51 205.7 174 64.4
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.0e-51 205.7 173 61.8
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 3.9e-51 205.3 155 69.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 3.9e-51 205.3 174 60.9
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 5.0e-51 204.9 152 65.8
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-50 203.8 174 60.3
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-50 203.8 174 60.3
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.5e-50 203.4 148 71.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.9e-50 203.0 238 51.7
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 3.3e-50 202.2 147 71.4
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 9.5e-50 200.7 172 63.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 9.5e-50 200.7 175 56.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.6e-49 199.9 143 71.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.6e-49 199.9 150 70.0
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.8e-49 199.1 156 67.9
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 6.2e-49 198.0 173 59.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 8.0e-49 197.6 152 63.2
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.8e-48 196.4 173 62.4
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 3.1e-48 195.7 180 61.7
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.0e-48 195.3 141 69.5
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 6.8e-48 194.5 176 56.2
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.2e-47 193.7 173 60.7
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.4e-47 191.8 148 66.2
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.8e-47 191.4 154 63.6
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.3e-46 190.3 146 65.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.7e-46 189.9 275 45.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.7e-46 189.9 143 65.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.7e-46 189.9 143 65.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 4.9e-46 188.3 146 63.0
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 4.9e-46 188.3 138 72.5
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 4.9e-46 188.3 148 65.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 8.3e-46 187.6 174 56.9
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.1e-45 187.2 151 64.9
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.1e-45 187.2 144 66.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.9e-45 186.4 146 65.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.4e-45 186.0 159 62.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.4e-45 186.0 148 63.5
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.1e-45 185.3 145 64.8
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.1e-45 185.3 145 64.8
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 7.0e-45 184.5 144 62.5
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 9.2e-45 184.1 175 60.0
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 9.2e-45 184.1 184 59.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.2e-44 183.7 157 58.6
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-44 183.3 149 63.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-44 183.3 145 64.1
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 2.7e-44 182.6 143 65.0
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 4.6e-44 181.8 150 60.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 4.6e-44 181.8 141 62.4
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 4.6e-44 181.8 141 62.4
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 6.0e-44 181.4 150 60.7
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 6.0e-44 181.4 141 63.1
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 6.0e-44 181.4 121 72.7
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.8e-44 181.0 145 63.4
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.3e-43 180.3 172 55.2
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.7e-43 179.9 146 62.3
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.0e-43 179.1 143 62.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.9e-43 178.7 174 56.9
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.5e-42 176.8 154 60.4
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 7.3e-42 174.5 173 53.2
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 9.5e-42 174.1 144 60.4
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.6e-41 172.2 151 63.6
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.7e-41 171.8 147 63.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.1e-40 170.6 142 62.0
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.4e-40 170.2 180 52.8
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.2e-39 167.2 172 54.7
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 8.3e-38 161.0 146 58.2
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 4.1e-37 158.7 229 43.2
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.1e-36 156.4 136 58.8
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 4.6e-36 155.2 147 57.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 4.6e-36 155.2 121 61.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.9e-35 152.1 119 63.0
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.9e-35 152.1 140 56.4
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.3e-34 148.7 140 54.3
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.6e-33 146.7 151 52.3
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.8e-32 143.3 117 59.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.8e-32 143.3 120 57.5
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.0e-31 139.8 172 48.8
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.6e-31 139.4 119 55.5
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.3e-30 137.1 248 36.7
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.4e-29 132.9 117 59.8
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.6e-28 130.2 155 46.5
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.6e-28 130.2 149 48.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.6e-28 130.2 149 48.3
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 3.5e-28 129.0 159 44.0
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 6.6e-27 124.8 128 51.6
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 6.6e-27 124.8 128 51.6
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 3.3e-26 122.5 146 46.6
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.5e-23 113.6 99 54.5
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.4e-23 112.5 177 40.7
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.8e-23 111.7 139 43.9
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.7e-22 110.2 121 54.5
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 3.5e-20 102.4 85 65.9
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 4.6e-20 102.1 103 48.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.3e-17 94.0 115 47.0
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.6e-17 92.4 168 38.1
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.8e-14 82.4 90 53.3
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 8.4e-14 81.3 90 53.3
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-13 79.3 90 53.3
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.2e-13 79.3 90 53.3
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 4.6e-12 75.5 90 50.0
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 3.9e-11 72.4 86 50.0
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 3.9e-11 72.4 86 50.0
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.3e-09 67.4 48 64.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.4e-08 63.2 58 56.9
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 7.6e-07 58.2 48 66.7
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-06 55.1 42 64.3


User provided reference genes

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