Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-130 469.9 233 100.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 5.7e-111 404.4 233 87.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.1e-109 398.7 233 85.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 5.6e-106 387.9 233 82.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 6.8e-88 327.8 235 70.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.0e-87 326.2 245 68.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.0e-87 326.2 245 68.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.7e-86 322.0 232 70.3
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.1e-85 320.5 236 71.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.1e-84 316.2 234 67.9
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.5e-84 315.5 241 69.3
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.7e-83 313.2 237 70.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 7.3e-82 307.8 236 68.2
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.3e-80 302.8 241 63.9
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.3e-80 302.8 241 63.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.0e-80 302.0 241 66.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 8.9e-80 300.8 241 63.5
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.3e-78 297.0 236 64.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.2e-78 296.2 239 64.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.9e-78 295.8 244 61.5
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.4e-77 293.5 244 59.4
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 9.2e-77 290.8 246 61.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.6e-76 290.0 240 62.5
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 6.0e-76 288.1 241 62.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.8e-76 287.7 242 63.2
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.3e-75 287.0 249 61.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.9e-75 285.4 245 60.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 6.6e-75 284.6 245 58.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 8.6e-75 284.3 242 62.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.5e-74 282.7 241 61.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.6e-74 281.6 243 60.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.3e-74 281.2 242 61.6
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.6e-74 280.8 186 70.4
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.6e-74 280.8 241 61.0
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.1e-73 279.6 247 60.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-73 279.6 241 61.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.6e-73 278.9 247 60.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 6.2e-73 278.1 241 60.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.2e-73 278.1 247 59.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.4e-72 276.9 241 58.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.8e-72 276.6 244 60.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.4e-72 276.2 242 60.7
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.1e-72 275.8 207 66.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.1e-72 275.8 184 71.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 5.2e-72 275.0 243 58.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.0e-71 273.1 185 69.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.6e-71 272.7 185 68.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.6e-71 272.7 245 58.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.4e-71 272.3 246 59.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.4e-71 271.9 242 59.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 5.8e-71 271.6 241 60.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.8e-71 271.6 243 58.4
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.6e-71 271.2 250 57.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 9.9e-71 270.8 235 60.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.9e-70 268.5 241 59.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.4e-70 267.7 199 67.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.1e-69 267.3 243 60.1
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-69 266.9 214 62.6
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-69 266.9 190 67.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-69 266.9 190 67.4
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.4e-69 266.2 176 73.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.4e-69 266.2 248 58.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.2e-69 265.8 185 68.6
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.2e-69 265.8 237 57.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-69 265.8 243 58.0
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.2e-69 265.4 214 62.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 4.2e-69 265.4 239 57.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.4e-69 265.0 245 58.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.3e-69 264.2 178 69.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.2e-68 263.8 181 69.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-68 263.8 191 66.5
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.2e-68 263.8 245 57.1
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.6e-68 263.5 248 56.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.1e-68 263.1 244 57.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.7e-68 262.7 245 56.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.5e-68 262.3 178 70.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 6.0e-68 261.5 185 67.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 6.0e-68 261.5 185 67.0
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.8e-68 261.2 240 57.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 7.8e-68 261.2 212 60.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.3e-67 260.4 242 58.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-67 260.0 179 68.7
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.7e-67 260.0 254 55.9
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.0e-67 259.2 240 57.9
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 5.1e-67 258.5 245 56.7
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.6e-67 258.1 184 67.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 6.6e-67 258.1 179 68.2
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.6e-67 258.1 179 65.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-66 257.3 185 65.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-66 257.3 185 65.9
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.9e-66 256.5 185 65.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.9e-66 256.5 181 68.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.9e-66 256.5 203 63.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-66 256.1 242 57.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.3e-66 255.8 240 57.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.3e-66 255.4 163 76.1
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 7.3e-66 254.6 180 68.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 7.3e-66 254.6 180 68.3
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-65 253.8 240 56.7
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.6e-65 253.4 233 54.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-65 253.4 180 67.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.6e-65 253.4 252 55.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.8e-65 252.7 178 67.4
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.8e-65 252.7 250 54.4
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.8e-65 252.7 243 56.4
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.6e-65 252.3 228 58.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.8e-65 251.9 239 56.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.0e-64 248.8 232 56.5
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.9e-64 248.1 255 51.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.5e-63 245.4 240 53.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 9.9e-63 244.2 207 57.0
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 2.9e-62 242.7 230 54.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.9e-62 242.7 164 67.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.9e-62 241.9 175 64.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.9e-62 241.9 224 54.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.4e-62 241.5 242 53.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.4e-62 241.5 226 58.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.9e-61 240.0 246 54.1
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 3.2e-61 239.2 242 53.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.2e-61 239.2 180 63.9
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.2e-61 239.2 237 54.4
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-61 238.4 151 74.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 7.1e-61 238.0 228 55.7
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.6e-60 236.9 172 64.0
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.0e-60 235.0 203 57.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.9e-59 232.3 172 62.8
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-58 230.3 163 65.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-57 226.9 147 72.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 9.0e-56 221.1 166 62.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 9.9e-55 217.6 235 51.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.3e-54 217.2 225 49.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.3e-54 217.2 171 61.4
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.4e-54 214.5 222 52.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.9e-53 213.4 222 54.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.2e-53 212.2 206 52.4
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.2e-53 212.2 173 56.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.5e-53 211.8 185 54.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-52 208.8 164 63.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.3e-51 206.5 232 48.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-48 197.2 163 62.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.3e-48 195.3 132 68.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-42 176.0 147 61.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.9e-39 165.2 112 67.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 6.1e-36 155.2 172 44.2
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.0e-35 152.9 222 36.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.7e-33 146.0 106 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.2e-30 136.7 175 40.6
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 3.8e-30 136.0 150 49.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 5.0e-30 135.6 161 42.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 3.6e-28 129.4 161 41.0
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.5e-23 112.5 76 67.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.0e-19 99.8 86 57.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.8e-16 90.5 154 36.4
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.6e-15 86.7 87 48.3
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.3e-14 84.3 104 43.3
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 9.1e-08 61.6 51 54.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 9.1e-08 61.6 51 54.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 6.5e-06 55.5 58 46.6


User provided reference genes

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