Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G079333 Glycine max HOM05D001279 ORTHO05D009618 2.0e-98 362.5 183 100.0
Glyma.17G245800 Glycine max HOM05D001279 ORTHO05D009618 7.5e-90 334.0 182 91.2
Phvul.001G018600 Phaseolus vulgaris HOM05D001279 ORTHO05D009618 1.9e-85 319.3 182 86.3
VMungo0647G1436 Vigna mungo HOM05D001279 ORTHO05D009618 3.3e-85 318.5 182 86.3
Lj5g0026644 Lotus japonicus HOM05D001279 ORTHO05D009618 1.8e-72 276.2 182 74.2
Ca_13316_v3 Cicer arietinum L. HOM05D001279 ORTHO05D009618 2.7e-71 272.3 181 74.0
arahy.Tifrunner.gnm1.ann1.5J9JWM Arachis hypogaea HOM05D001279 ORTHO05D009618 1.3e-70 270.0 182 71.4
arahy.Tifrunner.gnm1.ann1.87Y2S4 Arachis hypogaea HOM05D001279 ORTHO05D009618 1.3e-70 270.0 182 71.4
TPR.G13681 Trifolium pratense HOM05D001279 ORTHO05D009618 8.6e-70 267.3 182 70.9
Psat6g011440 Pisum sativum HOM05D001279 ORTHO05D009618 9.5e-69 263.8 182 72.0
Medtr1g021180 Medicago truncatula HOM05D001279 ORTHO05D009618 1.4e-67 260.0 181 71.3
Lalb_Chr22g0355261 Lupinus albus HOM05D001279 ORTHO05D009618 3.4e-66 255.4 182 70.3
Cfa018492 Carpinus fangiana HOM05D001279 ORTHO05D009618 5.6e-53 211.5 184 56.5
CSS0006181 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 2.1e-52 209.5 176 55.7
CSS0048007 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 2.1e-52 209.5 176 55.7
Haze_17583 Corylus avellana HOM05D001279 ORTHO05D009618 8.1e-52 207.6 184 54.9
Dinv39351 Davidia involucrata HOM05D001279 ORTHO05D009618 4.0e-51 205.3 177 57.1
QL02p006279 Quercus lobata HOM05D001279 ORTHO05D009618 3.4e-50 202.2 182 52.7
MBI16_g08581_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D009618 2.9e-49 199.1 177 54.2
Actinidia22594 Actinidia chinensis HOM05D001279 ORTHO05D009618 6.4e-49 198.0 177 54.2
Dinv36006 Davidia involucrata HOM05D001279 ORTHO05D009618 5.4e-48 194.9 175 54.9
vmacro21579 Vaccinium macrocarpon HOM05D001279 ORTHO05D009618 2.7e-47 192.6 177 52.0
CiPaw.16G050900 Carya illinoinensis HOM05D001279 ORTHO05D009618 5.1e-46 188.3 182 51.6
TAR381G1355 Trochodendron aralioides HOM05D001279 ORTHO05D009618 1.2e-44 183.7 181 49.7
PSO541G2686 Papaver somniferum HOM05D001279 ORTHO05D009618 2.1e-44 183.0 182 48.9
PSO675G6998 Papaver somniferum HOM05D001279 ORTHO05D009618 2.1e-44 183.0 182 48.4
Prupe.1G389000 Prunus persica HOM05D001279 ORTHO05D009618 6.2e-44 181.4 180 48.9
RcHm_v2.0_Chr6g0299921 Rosa chinensis HOM05D001279 ORTHO05D009618 8.1e-44 181.0 186 51.1
Nn5g29377 Nelumbo nucifera HOM05D001279 ORTHO05D009618 1.1e-43 180.6 172 52.3
MD15G1034900 Malus domestica HOM05D001279 ORTHO05D009618 1.4e-43 180.3 181 48.1
Rhsim06G0041200 Rhododendron simsii HOM05D001279 ORTHO05D009618 5.2e-43 178.3 156 55.1
Gorai.002G130600 Gossypium raimondii HOM05D001279 ORTHO05D009618 1.2e-42 177.2 174 48.9
MD08G1040400 Malus domestica HOM05D001279 ORTHO05D009618 1.5e-42 176.8 181 47.5
Gohir.D01G106400 Gossypium hirsutum HOM05D001279 ORTHO05D009618 2.0e-42 176.4 174 48.9
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 3.4e-42 175.6 174 47.7
Gohir.A01G118100 Gossypium hirsutum HOM05D001279 ORTHO05D009618 9.9e-42 174.1 174 47.1
Duzib093G1800 Durio zibethinus HOM05D001279 ORTHO05D009618 2.2e-41 172.9 174 47.7
Cpa.g.sc357.10 Carica papaya HOM05D001279 ORTHO05D009618 3.8e-41 172.2 176 51.1
Thecc.08G015700 Theobroma cacao HOM05D001279 ORTHO05D009618 8.4e-41 171.0 174 47.1
DCAR_012762 Daucus carota HOM05D001279 ORTHO05D001636 5.4e-40 168.3 175 47.4
Eucgr.F02384 Eucalyptus grandis HOM05D001279 ORTHO05D009618 7.8e-39 164.5 174 44.8
Manes.18G035401 Manihot esculenta HOM05D001279 ORTHO05D009618 1.0e-38 164.1 181 44.8
Sabra14G0026100 Salix brachista HOM05D001279 ORTHO05D009618 1.3e-38 163.7 183 45.9
FAN15G1316 Fragaria x ananassa HOM05D001279 ORTHO05D009618 5.1e-38 161.8 175 46.9
CANSAT25G1505 Cannabis sativa HOM05D001279 ORTHO05D009618 6.6e-38 161.4 184 47.3
Aqoxy6G00907 Aquilegia oxysepala HOM05D001279 ORTHO05D009618 8.7e-38 161.0 165 48.5
FvH4_2g40681 Fragaria vesca HOM05D001279 ORTHO05D009618 1.1e-37 160.6 175 46.9
TWI56G1268 Tripterygium wilfordii HOM05D001279 ORTHO05D009618 1.5e-37 160.2 175 46.3
Lj4A49G69 Lonicera japonica HOM05D001279 ORTHO05D009618 1.9e-37 159.8 175 49.7
FAN20G0232 Fragaria x ananassa HOM05D001279 ORTHO05D001636 5.6e-37 158.3 175 45.7
FAN20G1724 Fragaria x ananassa HOM05D001279 ORTHO05D001636 5.6e-37 158.3 175 45.7
PGR031G1589 Punica granatum HOM05D001279 ORTHO05D009618 7.3e-37 157.9 169 48.5
Potri.014G036300 Populus trichocarpa HOM05D001279 ORTHO05D009618 1.6e-36 156.8 183 45.4
Lsat_1_v5_gn_4_123141 Lactuca sativa HOM05D001279 ORTHO05D009618 3.6e-36 155.6 160 47.5
Sed0016077 Sechium edule HOM05D001279 ORTHO05D009618 4.0e-35 152.1 169 42.0
Manes.05G169300 Manihot esculenta HOM05D001279 ORTHO05D009618 5.3e-35 151.8 182 43.4
HanXRQChr16g0508101 Helianthus annuus HOM05D001279 ORTHO05D009618 6.9e-35 151.4 164 43.9
ECA232G0918 Erigeron canadensis HOM05D001279 ORTHO05D009618 1.5e-34 150.2 162 45.7
FAN27G0688 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.5e-34 150.2 183 41.5
PGSC0003DMG402011681 Solanum tuberosum HOM05D001279 ORTHO05D009618 3.4e-34 149.1 182 42.9
Peaxi162Scf01514g00030 Petunia axillaris HOM05D001279 ORTHO05D009618 4.5e-34 148.7 182 44.5
Sopen04g033120 Solanum pennellii HOM05D001279 ORTHO05D009618 1.3e-33 147.1 182 42.9
Solyc04g079540.3 Solanum lycopersicum HOM05D001279 ORTHO05D009618 2.9e-33 146.0 182 42.3
Nitab4.5_0008935g0010 Nicotiana tabacum HOM05D001279 ORTHO05D009618 1.1e-32 144.1 182 42.3
Migut.N02687 Erythranthe guttata HOM05D001279 ORTHO05D009618 4.2e-32 142.1 169 45.6
Nitab4.5_0000068g0160 Nicotiana tabacum HOM05D001279 ORTHO05D009618 5.4e-32 141.7 182 41.8
THA.LOC104815190 Tarenaya hassleriana HOM05D001279 ORTHO05D009618 6.0e-31 138.3 163 45.4
AT1G47310 Arabidopsis thaliana HOM05D001279 ORTHO05D009618 6.7e-30 134.8 167 43.7
SalBow8G1709 Salvia bowleyana HOM05D001279 ORTHO05D009618 1.5e-29 133.7 174 43.7
Aa31sc380G30 Aethionema arabicum HOM05D001279 ORTHO05D009618 2.5e-29 132.9 165 44.2
ClCG05G019520 Citrullus lanatus HOM05D001279 ORTHO05D009618 3.3e-29 132.5 169 40.8
AL1G54070 Arabidopsis lyrata HOM05D001279 ORTHO05D009618 4.3e-29 132.1 165 43.6
CARHR037310 Cardamine hirsuta HOM05D001279 ORTHO05D009618 4.3e-29 132.1 167 43.1
Sp1g34690 Schrenkiella parvula HOM05D001279 ORTHO05D009618 4.3e-29 132.1 167 42.5
CsaV3_4G033960 Cucumis sativus L. HOM05D001279 ORTHO05D009618 2.1e-28 129.8 169 39.6
Thhalv10011550m.g Eutrema salsugineum HOM05D001279 ORTHO05D009618 2.8e-28 129.4 169 42.0
MELO3C016722.2 Cucumis melo HOM05D001279 ORTHO05D009618 3.7e-28 129.0 176 38.1
A10p06240 Brassica napus HOM05D001279 ORTHO05D009618 4.8e-28 128.6 170 41.8
BraA10t42892Z Brassica rapa HOM05D001279 ORTHO05D009618 6.2e-28 128.3 170 41.8
BcaC08g42968 Brassica carinata HOM05D001279 ORTHO05D009618 3.1e-27 125.9 164 42.7
C06p02080 Brassica napus HOM05D001279 ORTHO05D009618 3.1e-27 125.9 164 42.7
COL.COLO4_26434 Corchorus olitorius HOM05D001279 ORTHO05D009618 3.1e-27 125.9 146 41.1
Carub.0001s3646 Capsella rubella HOM05D001279 ORTHO05D009618 9.0e-27 124.4 162 43.2
BcaB07g33819 Brassica carinata HOM05D001279 ORTHO05D009618 1.5e-26 123.6 164 40.9
Sc15g0006520 Simmondsia chinensis HOM05D001279 ORTHO05D009618 5.8e-26 121.7 174 39.7
CDE07G1628 Ceratophyllum demersum HOM05D001279 ORTHO05D009618 7.6e-26 121.3 170 39.4
HPP92_018728 Vanilla planifolia HOM05D001279 ORTHO05D009618 1.3e-25 120.6 174 40.2
BolC6t35339H Brassica oleracea HOM05D001279 ORTHO05D009618 2.2e-25 119.8 164 41.5
SGA_v2.0_scaffold558G52916 Striga asiatica HOM05D001279 ORTHO05D009618 6.4e-25 118.2 162 40.7
unitig_22.g6775 Utricularia gibba HOM05D001279 ORTHO05D009618 4.2e-24 115.5 164 37.2
Actinidia15275 Actinidia chinensis HOM05D001279 ORTHO05D009618 1.6e-20 103.6 104 51.0
Zm00001eb214130 Zea mays HOM05D001279 ORTHO05D009618 1.4e-19 100.5 176 34.7
Os03g0765100 Oryza sativa ssp. japonica HOM05D001279 ORTHO05D009618 1.3e-14 84.0 187 29.4
Hma1.2p1_0727F.1_g209110 Hydrangea macrophylla HOM05D001279 ORTHO05D009618 4.3e-13 79.0 58 60.3
ATR0716G073 Amborella trichopoda HOM05D001279 ORTHO05D009618 6.9e-11 71.6 72 50.0
AagrBONN_evm.TU.Sc2ySwM_368.339 Anthoceros agrestis HOM05D005406 ORTHO05D006599 2.2e-09 66.6 109 36.7
SalBow6G6746 Salvia bowleyana HOM05D005406 ORTHO05D006599 1.1e-08 64.3 94 38.3
HanXRQChr10g0291291 Helianthus annuus HOM05D005406 ORTHO05D006599 1.9e-08 63.5 87 37.9
Medtr1g021220 Medicago truncatula HOM05D001279 ORTHO05D009618 4.2e-08 62.4 80 43.8
TAR625G1228 Trochodendron aralioides HOM05D005406 ORTHO05D006599 4.2e-08 62.4 105 32.4
Migut.B00502 Erythranthe guttata HOM05D005406 ORTHO05D006599 5.5e-08 62.0 106 34.0
Ah.01g024310 Amaranthus hybridus HOM05D005406 ORTHO05D006599 7.2e-08 61.6 109 36.7
MSTRG.16653 Avicennia marina HOM05D005406 ORTHO05D006599 7.2e-08 61.6 95 37.9
THA.LOC104819322 Tarenaya hassleriana HOM05D005406 ORTHO05D006599 7.2e-08 61.6 122 32.8
EL10Ac9g22145 Beta vulgaris HOM05D005406 ORTHO05D006599 9.4e-08 61.2 96 35.4
ECA234G4519 Erigeron canadensis HOM05D005406 ORTHO05D006599 9.4e-08 61.2 91 38.5
PSO541G4550 Papaver somniferum HOM05D005406 ORTHO05D006599 9.4e-08 61.2 106 34.9
GSVIVG01036961001 Vitis vinifera HOM05D005406 ORTHO05D006599 9.4e-08 61.2 95 37.9
GSVIVG01036964001 Vitis vinifera HOM05D005406 ORTHO05D006599 9.4e-08 61.2 95 37.9
Gohir.A01G179200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 1.2e-07 60.8 98 35.7
Manes.07G049000 Manihot esculenta HOM05D005406 ORTHO05D006599 1.2e-07 60.8 95 34.7
PSO675G0725 Papaver somniferum HOM05D005406 ORTHO05D006599 1.6e-07 60.5 106 34.9
HanXRQChr03g0075901 Helianthus annuus HOM05D005406 ORTHO05D006599 2.1e-07 60.1 87 37.9
Lj6g0016064 Lotus japonicus HOM05D005406 ORTHO05D006599 2.1e-07 60.1 110 35.5
Lalb_Chr18g0060221 Lupinus albus HOM05D005406 ORTHO05D006599 2.1e-07 60.1 89 36.0
SalBow6G6486 Salvia bowleyana HOM05D005406 ORTHO05D006599 2.7e-07 59.7 106 33.0
Mapoly0020s0010 Marchantia polymorpha HOM05D005406 ORTHO05D006599 3.6e-07 59.3 178 29.8
Gohir.D01G170000 Gossypium hirsutum HOM05D005406 ORTHO05D006599 4.6e-07 58.9 98 34.7
Lsat_1_v5_gn_5_110661 Lactuca sativa HOM05D005406 ORTHO05D006599 4.6e-07 58.9 94 33.0
Gorai.002G211600 Gossypium raimondii HOM05D005406 ORTHO05D006599 7.9e-07 58.2 98 34.7
Medtr2g010460 Medicago truncatula HOM05D005406 ORTHO05D006599 7.9e-07 58.2 95 33.7
Hund00407 Selenicereus undatus HOM05D005406 ORTHO05D006599 7.9e-07 58.2 96 36.5
arahy.Tifrunner.gnm1.ann1.SJVP3Q Arachis hypogaea HOM05D005406 ORTHO05D006599 1.0e-06 57.8 138 33.3
A06p31250 Brassica napus HOM05D005406 ORTHO05D006599 1.0e-06 57.8 97 33.0
C03p61740 Brassica napus HOM05D005406 ORTHO05D006599 1.0e-06 57.8 97 33.0
BolC3t18435H Brassica oleracea HOM05D005406 ORTHO05D006599 1.0e-06 57.8 97 33.0
BraA06t26063Z Brassica rapa HOM05D005406 ORTHO05D006599 1.0e-06 57.8 97 33.0
Carub.0008s2531 Capsella rubella HOM05D005406 ORTHO05D006599 1.0e-06 57.8 97 33.0
Ca_00193_v3 Cicer arietinum L. HOM05D005406 ORTHO05D006599 1.0e-06 57.8 95 34.7
Cc02_g20410 Coffea canephora HOM05D005406 ORTHO05D006599 1.0e-06 57.8 96 38.5
Medtr4g134220 Medicago truncatula HOM05D005406 ORTHO05D006599 1.0e-06 57.8 143 30.8
Oeu005736.1 Olea europaea HOM05D005406 ORTHO05D006599 1.0e-06 57.8 86 34.9
Oeu014213.1 Olea europaea HOM05D005406 ORTHO05D006599 1.0e-06 57.8 106 34.0
TWI14G0527 Tripterygium wilfordii HOM05D005406 ORTHO05D006599 1.0e-06 57.8 105 32.4
AagrBONN_evm.TU.Sc2ySwM_368.2452 Anthoceros agrestis HOM05D005406 ORTHO05D006599 1.4e-06 57.4 107 31.8
MSTRG.5302 Avicennia marina HOM05D005406 ORTHO05D006599 1.4e-06 57.4 95 33.7
ClCG02G007430 Citrullus lanatus HOM05D005406 ORTHO05D006599 1.4e-06 57.4 100 34.0
Sed0011512 Sechium edule HOM05D005406 ORTHO05D006599 1.4e-06 57.4 105 30.5
SEGI_14450 Sequoiadendron giganteum HOM05D005406 ORTHO05D006599 1.4e-06 57.4 99 33.3
Thecc.02G035200 Theobroma cacao HOM05D005406 ORTHO05D006599 1.4e-06 57.4 94 36.2
CARHR278480 Cardamine hirsuta HOM05D005406 ORTHO05D006599 1.8e-06 57.0 87 34.5
AUR62030902 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.8e-06 57.0 90 34.4
Manes.10G090700 Manihot esculenta HOM05D005406 ORTHO05D006599 1.8e-06 57.0 89 36.0
TAR381G0409 Trochodendron aralioides HOM05D005406 ORTHO05D006599 1.8e-06 57.0 89 36.0
AL8G41900 Arabidopsis lyrata HOM05D005406 ORTHO05D006599 2.3e-06 56.6 97 33.0
arahy.Tifrunner.gnm1.ann1.6V09A5 Arachis hypogaea HOM05D005406 ORTHO05D006599 2.3e-06 56.6 138 32.6
Os01g0767600 Oryza sativa ssp. japonica HOM05D005406 ORTHO05D006599 2.3e-06 56.6 87 35.6
Psat1g212280 Pisum sativum HOM05D005406 ORTHO05D006599 2.3e-06 56.6 95 34.7
SMO364G0576 Selaginella moellendorffii HOM05D005406 ORTHO05D006599 2.3e-06 56.6 98 29.6
Zm00001eb370180 Zea mays HOM05D005406 ORTHO05D006599 2.3e-06 56.6 94 35.1
Sed0003204 Sechium edule HOM05D005406 ORTHO05D006599 3.0e-06 56.2 100 31.0
unitig_747.g21249 Utricularia gibba HOM05D005406 ORTHO05D006599 3.0e-06 56.2 99 33.3
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 3.9e-06 55.8 93 33.3
AUR62027061 Chenopodium quinoa HOM05D005406 ORTHO05D006599 3.9e-06 55.8 90 34.4
Eucgr.I02516 Eucalyptus grandis HOM05D005406 ORTHO05D006599 3.9e-06 55.8 129 28.7
Hma1.2p1_0435F.1_g152460 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 3.9e-06 55.8 95 33.7
Sabra09G0063200 Salix brachista HOM05D005406 ORTHO05D006599 3.9e-06 55.8 89 37.1
Sp2g27590 Schrenkiella parvula HOM05D005406 ORTHO05D006599 3.9e-06 55.8 97 33.0
AT5G64510 Arabidopsis thaliana HOM05D005406 ORTHO05D006599 5.1e-06 55.5 97 32.0
Dinv16046 Davidia involucrata HOM05D005406 ORTHO05D006599 5.1e-06 55.5 95 33.7
Glyma.13G253400 Glycine max HOM05D005406 ORTHO05D006599 5.1e-06 55.5 94 36.2
Glyma.15G061500 Glycine max HOM05D005406 ORTHO05D006599 5.1e-06 55.5 94 36.2
Sc18g0007270 Simmondsia chinensis HOM05D005406 ORTHO05D006599 5.1e-06 55.5 87 35.6
Cpa.g.sc20.64 Carica papaya HOM05D005406 ORTHO05D006599 6.7e-06 55.1 95 33.7
DCAR_021922 Daucus carota HOM05D005406 ORTHO05D006599 6.7e-06 55.1 106 32.1
ECA236G2632 Erigeron canadensis HOM05D005406 ORTHO05D006599 6.7e-06 55.1 109 29.4
Thhalv10004273m.g Eutrema salsugineum HOM05D005406 ORTHO05D006599 6.7e-06 55.1 101 34.7
MD05G1112800 Malus domestica HOM05D005406 ORTHO05D006599 6.7e-06 55.1 95 32.6
Atru.chr5.2137 Acer truncatum HOM05D005406 ORTHO05D006599 8.8e-06 54.7 90 34.4
CAN.G504.65 Capsicum annuum HOM05D005406 ORTHO05D006599 8.8e-06 54.7 87 36.8
Duzib132G0847 Durio zibethinus HOM05D005406 ORTHO05D006599 8.8e-06 54.7 100 33.0
Prupe.8G157400 Prunus persica HOM05D005406 ORTHO05D006599 8.8e-06 54.7 89 32.6


User provided reference genes

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