Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1722.2 862 100.0
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1515.0 829 91.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1511.5 862 88.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1495.7 862 87.4
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1492.6 862 87.4
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1478.0 862 86.7
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1477.6 864 86.0
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1477.2 856 86.9
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1470.3 854 86.8
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1469.1 863 85.6
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1468.4 862 86.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1463.7 855 86.3
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1458.0 865 86.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1451.0 776 94.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1446.4 866 84.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1444.5 840 86.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1441.4 889 79.2
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1431.4 852 83.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1431.0 849 84.8
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1428.3 865 82.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1421.0 865 82.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1419.4 867 82.5
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1417.1 864 82.8
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1415.6 863 82.0
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 851 84.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1409.4 837 83.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1409.0 864 82.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 863 81.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1406.7 858 82.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 866 82.1
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1397.1 857 81.6
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1396.3 862 83.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1395.6 854 81.9
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1390.9 854 81.5
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1390.2 864 81.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1388.6 854 81.4
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 855 81.3
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1384.0 852 81.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 863 80.6
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1381.3 865 81.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 866 79.9
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 865 81.0
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 863 80.5
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 863 80.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 825 84.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 865 80.8
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 852 80.9
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 853 80.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 866 80.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 865 80.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 876 79.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 845 81.3
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 898 77.8
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 859 80.7
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 853 80.0
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 913 76.5
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 850 80.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1352.0 818 83.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 853 80.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 851 79.1
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 841 80.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 717 93.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 853 79.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 844 80.0
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 841 80.4
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 853 79.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1332.8 845 79.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 857 78.6
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 845 80.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 834 79.9
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 865 77.6
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1328.5 809 82.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 844 79.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1325.1 836 79.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1323.1 851 78.5
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 803 81.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 842 80.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 866 78.3
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 834 79.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 846 78.1
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 842 80.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 845 78.5
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 838 77.9
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 846 78.1
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 840 78.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 814 79.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 841 77.5
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 842 77.8
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 862 77.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 842 78.6
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 842 78.6
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 845 77.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 845 77.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 845 77.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 845 77.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 839 77.0
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 826 79.7
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 835 79.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 849 76.9
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 894 74.8
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 834 77.2
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 838 79.7
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 814 78.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 840 78.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 840 78.0
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 898 72.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 814 78.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 832 77.5
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 863 75.1
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 779 80.6
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 822 77.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 839 76.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 814 78.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 816 78.1
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 824 76.7
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 852 76.2
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 859 75.6
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 820 77.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 821 76.6
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 826 77.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 822 77.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 781 81.6
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 814 76.9
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 830 77.5
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 820 76.7
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 816 77.8
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 804 76.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 818 75.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1226.5 844 70.4
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 843 75.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1218.4 829 75.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 879 72.1
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 839 75.4
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1184.5 816 73.7
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 758 79.0
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 907 68.6
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1167.9 810 72.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1157.9 818 71.1
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1134.0 817 69.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 813 70.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1112.8 735 77.8
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 3.7e-304 1048.1 834 67.7
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 5.9e-286 987.6 605 79.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.0e-277 960.3 631 72.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-273 946.8 839 62.7
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 9.4e-268 927.2 552 85.0
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.1e-263 913.7 589 75.2
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.3e-256 890.2 525 81.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.2e-187 658.7 708 54.1
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 9.1e-146 521.9 460 58.5
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.2e-143 513.5 359 78.3
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.6e-142 511.1 327 76.8
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-111 408.7 318 71.4
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.2e-101 373.2 397 53.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.7e-96 358.2 255 67.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.8e-89 332.8 581 45.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 3.9e-72 277.3 153 86.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-57 228.8 156 75.0
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.6e-44 184.9 163 57.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 6.5e-35 153.7 503 28.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.4e-31 141.0 460 28.5
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 2.2e-30 138.7 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.3e-30 137.1 467 26.3
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-28 132.1 128 56.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 6.5e-27 127.1 74 79.7
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.2e-26 124.8 68 86.8
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.0e-24 119.8 492 28.0
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.3e-24 118.6 441 27.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.0e-24 117.9 96 64.6
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.3e-16 92.0 72 61.1
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 6.8e-16 90.5 220 31.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-15 88.6 266 27.1
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.8e-09 68.6 131 34.4
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-07 63.2 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.3e-06 59.7 38 76.3


User provided reference genes

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