Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G074800 Glycine max HOM05D002092 ORTHO05D031203 3.0e-44 181.4 90 100.0
Glyma.17G250700 Glycine max HOM05D002092 ORTHO05D005410 8.6e-39 163.3 111 78.4
Lj1g0019872 Lotus japonicus HOM05D002092 ORTHO05D005410 3.7e-34 147.9 76 92.1
Glyma.06G031900 Glycine max HOM05D002092 ORTHO05D005410 6.4e-34 147.1 82 87.8
Glyma.04G031800 Glycine max HOM05D002092 ORTHO05D005410 2.4e-33 145.2 76 89.5
Lalb_Chr08g0245871 Lupinus albus HOM05D002092 ORTHO05D005410 2.4e-33 145.2 76 90.8
Ca_13372_v3 Cicer arietinum L. HOM05D002092 ORTHO05D005410 3.2e-33 144.8 111 70.3
arahy.Tifrunner.gnm1.ann1.80GNXC Arachis hypogaea HOM05D002092 ORTHO05D005410 4.1e-33 144.4 85 84.7
arahy.Tifrunner.gnm1.ann1.YL0Q9N Arachis hypogaea HOM05D002092 ORTHO05D005410 4.1e-33 144.4 85 84.7
VMungo1309G2350 Vigna mungo HOM05D002092 ORTHO05D005410 4.1e-33 144.4 76 89.5
Phvul.009G058000 Phaseolus vulgaris HOM05D002092 ORTHO05D005410 1.2e-32 142.9 76 89.5
Medtr3g111870 Medicago truncatula HOM05D002092 ORTHO05D005410 1.6e-32 142.5 79 86.1
Ca_15513_v3 Cicer arietinum L. HOM05D002092 ORTHO05D005410 2.1e-32 142.1 76 88.2
TPR.G20153 Trifolium pratense HOM05D002092 ORTHO05D005410 2.1e-32 142.1 111 69.4
TPR.G35016 Trifolium pratense HOM05D002092 ORTHO05D031203 2.1e-32 142.1 79 86.1
Medtr1g022260 Medicago truncatula HOM05D002092 ORTHO05D005410 7.8e-32 140.2 111 67.6
Lalb_Chr11g0062311 Lupinus albus HOM05D002092 ORTHO05D005410 1.0e-31 139.8 76 85.5
Rhsim07G0239800 Rhododendron simsii HOM05D002092 ORTHO05D005410 8.6e-31 136.7 83 79.5
Cc10_g02830 Coffea canephora HOM05D002092 ORTHO05D005410 1.1e-30 136.3 78 82.1
Psat6g008960 Pisum sativum HOM05D002092 ORTHO05D005410 1.9e-30 135.6 111 66.7
vmacro04530 Vaccinium macrocarpon HOM05D002092 ORTHO05D005410 1.9e-30 135.6 86 75.6
Thecc.08G027200 Theobroma cacao HOM05D002092 ORTHO05D005410 2.5e-30 135.2 83 78.3
FvH4_2g39770 Fragaria vesca HOM05D002092 ORTHO05D005410 4.3e-30 134.4 78 80.8
FAN27G0602 Fragaria x ananassa HOM05D002092 ORTHO05D005410 4.3e-30 134.4 78 80.8
CAN.G1226.21 Capsicum annuum HOM05D002092 ORTHO05D005410 5.6e-30 134.0 84 76.2
Duzib093G2094 Durio zibethinus HOM05D002092 ORTHO05D005410 5.6e-30 134.0 83 77.1
Migut.C00738 Erythranthe guttata HOM05D002092 ORTHO05D005410 7.3e-30 133.7 82 79.3
FAN20G1956 Fragaria x ananassa HOM05D002092 ORTHO05D005410 7.3e-30 133.7 78 80.8
CANSAT25G0183 Cannabis sativa HOM05D002092 ORTHO05D005410 9.5e-30 133.3 79 81.0
CiPaw.15G078600 Carya illinoinensis HOM05D002092 ORTHO05D005410 9.5e-30 133.3 83 78.3
Ciclev10000800m.g Citrus clementina HOM05D002092 ORTHO05D005410 9.5e-30 133.3 76 81.6
Psat2g033440 Pisum sativum HOM05D002092 ORTHO05D005410 9.5e-30 133.3 111 61.3
RcHm_v2.0_Chr6g0301091 Rosa chinensis HOM05D002092 ORTHO05D005410 9.5e-30 133.3 78 79.5
FAN15G1126 Fragaria x ananassa HOM05D002092 ORTHO05D005410 1.2e-29 132.9 78 79.5
Nitab4.5_0002224g0020 Nicotiana tabacum HOM05D002092 ORTHO05D005410 1.2e-29 132.9 86 74.4
Solyc04g080430.3 Solanum lycopersicum HOM05D002092 ORTHO05D005410 1.2e-29 132.9 83 77.1
Sopen04g034010 Solanum pennellii HOM05D002092 ORTHO05D005410 1.2e-29 132.9 83 77.1
PGSC0003DMG400003681 Solanum tuberosum HOM05D002092 ORTHO05D005410 1.2e-29 132.9 83 77.1
GSVIVG01009713001 Vitis vinifera HOM05D002092 ORTHO05D005410 1.2e-29 132.9 83 75.9
Manes.05G159400 Manihot esculenta HOM05D002092 ORTHO05D005410 1.6e-29 132.5 83 74.7
Sc15g0006940 Simmondsia chinensis HOM05D002092 ORTHO05D005410 1.6e-29 132.5 78 79.5
CiPaw.16G058900 Carya illinoinensis HOM05D002092 ORTHO05D005410 2.1e-29 132.1 83 75.9
Gohir.A06G010100 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.1e-29 132.1 83 75.9
Gohir.D06G007500 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.1e-29 132.1 83 75.9
Gorai.010G010200 Gossypium raimondii HOM05D002092 ORTHO05D005410 2.1e-29 132.1 83 75.9
PSO210G7256 Papaver somniferum HOM05D002092 ORTHO05D005410 2.1e-29 132.1 88 72.7
PSO731G0029 Papaver somniferum HOM05D002092 ORTHO05D005410 2.1e-29 132.1 88 72.7
Peaxi162Scf00931g00119 Petunia axillaris HOM05D002092 ORTHO05D005410 2.1e-29 132.1 86 74.4
Eucgr.F01892 Eucalyptus grandis HOM05D002092 ORTHO05D005410 2.8e-29 131.7 83 77.1
Thhalv10018265m.g Eutrema salsugineum HOM05D002092 ORTHO05D005410 2.8e-29 131.7 83 74.7
DCAR_013820 Daucus carota HOM05D002092 ORTHO05D005410 3.6e-29 131.3 83 74.7
SalBow7G2615 Salvia bowleyana HOM05D002092 ORTHO05D005410 3.6e-29 131.3 76 81.6
Actinidia38005 Actinidia chinensis HOM05D002092 ORTHO05D005410 4.7e-29 131.0 78 78.2
QL02p008697 Quercus lobata HOM05D002092 ORTHO05D005410 4.7e-29 131.0 83 75.9
AL2G35120 Arabidopsis lyrata HOM05D002092 ORTHO05D005410 6.2e-29 130.6 83 74.7
TWI12G1471 Tripterygium wilfordii HOM05D002092 ORTHO05D005410 6.2e-29 130.6 83 74.7
Aa31LG4G5430 Aethionema arabicum HOM05D002092 ORTHO05D005410 8.1e-29 130.2 78 76.9
Sp5g30370 Schrenkiella parvula HOM05D002092 ORTHO05D005410 8.1e-29 130.2 78 78.2
Actinidia29822 Actinidia chinensis HOM05D002092 ORTHO05D005410 1.1e-28 129.8 78 78.2
MSTRG.1275 Avicennia marina HOM05D002092 ORTHO05D005410 1.1e-28 129.8 83 73.5
BraA07t30538Z Brassica rapa HOM05D002092 ORTHO05D005410 1.1e-28 129.8 83 74.7
Nn1g04982 Nelumbo nucifera HOM05D002092 ORTHO05D005410 1.1e-28 129.8 86 73.3
AT1G75210 Arabidopsis thaliana HOM05D002092 ORTHO05D005410 1.8e-28 129.0 83 73.5
Carub.0002s2203 Capsella rubella HOM05D002092 ORTHO05D005410 1.8e-28 129.0 83 73.5
unitig_749.g13848 Utricularia gibba HOM05D002092 ORTHO05D005410 1.8e-28 129.0 86 70.9
CARHR068540 Cardamine hirsuta HOM05D002092 ORTHO05D005410 2.3e-28 128.6 77 75.3
Gohir.A05G193700 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.3e-28 128.6 87 73.6
HanXRQChr05g0153601 Helianthus annuus HOM05D002092 ORTHO05D005410 2.3e-28 128.6 77 77.9
Potri.014G196700 Populus trichocarpa HOM05D002092 ORTHO05D005410 3.1e-28 128.3 84 73.8
A07p28960 Brassica napus HOM05D002092 ORTHO05D005410 4.0e-28 127.9 83 73.5
CSS0040518 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D005410 4.0e-28 127.9 72 81.9
Gorai.009G201800 Gossypium raimondii HOM05D002092 ORTHO05D005410 4.0e-28 127.9 87 73.6
Prupe.1G379000 Prunus persica HOM05D002092 ORTHO05D005410 4.0e-28 127.9 78 75.6
BcaC08g45591 Brassica carinata HOM05D002092 ORTHO05D005410 5.2e-28 127.5 83 73.5
C06p32730 Brassica napus HOM05D002092 ORTHO05D005410 5.2e-28 127.5 83 73.5
BolC6t38397H Brassica oleracea HOM05D002092 ORTHO05D005410 5.2e-28 127.5 83 73.5
PGR031G1345 Punica granatum HOM05D002092 ORTHO05D005410 5.2e-28 127.5 76 77.6
Duzib116G0196 Durio zibethinus HOM05D002092 ORTHO05D005410 6.8e-28 127.1 83 73.5
Gohir.D05G196832 Gossypium hirsutum HOM05D002092 ORTHO05D005410 6.8e-28 127.1 87 73.6
TAR628G1066 Trochodendron aralioides HOM05D002092 ORTHO05D005410 6.8e-28 127.1 76 77.6
Cfa018155 Carpinus fangiana HOM05D002092 ORTHO05D005410 8.9e-28 126.7 87 73.6
Lsat_1_v5_gn_5_27540 Lactuca sativa HOM05D002092 ORTHO05D005410 8.9e-28 126.7 75 78.7
MD08G1031400 Malus domestica HOM05D002092 ORTHO05D005410 8.9e-28 126.7 76 76.3
Medtr5g082530 Medicago truncatula HOM05D002092 ORTHO05D005410 8.9e-28 126.7 81 77.8
Sed0014237 Sechium edule HOM05D002092 ORTHO05D005410 8.9e-28 126.7 83 73.5
CDE01G0519 Ceratophyllum demersum HOM05D002092 ORTHO05D005410 1.2e-27 126.3 86 68.6
ClCG08G015070 Citrullus lanatus HOM05D002092 ORTHO05D005410 1.2e-27 126.3 83 72.3
MELO3C010944.2 Cucumis melo HOM05D002092 ORTHO05D005410 1.2e-27 126.3 76 77.6
CsaV3_2G028720 Cucumis sativus L. HOM05D002092 ORTHO05D005410 1.2e-27 126.3 76 77.6
EL10Ac1g01756 Beta vulgaris HOM05D002092 ORTHO05D005410 1.5e-27 125.9 78 76.9
Atru.chr13.465 Acer truncatum HOM05D002092 ORTHO05D005410 2.0e-27 125.6 83 69.9
ATR0733G055 Amborella trichopoda HOM05D002092 ORTHO05D005410 2.0e-27 125.6 88 69.3
BcaB02g07016 Brassica carinata HOM05D002092 ORTHO05D005410 2.6e-27 125.2 83 72.3
Hma1.2p1_0203F.1_g086340 Hydrangea macrophylla HOM05D002092 ORTHO05D005410 2.6e-27 125.2 78 71.8
Manes.18G026700 Manihot esculenta HOM05D002092 ORTHO05D005410 2.6e-27 125.2 83 72.3
Hund26570 Selenicereus undatus HOM05D002092 ORTHO05D005410 3.4e-27 124.8 78 75.6
Sabra14G0145500 Salix brachista HOM05D002092 ORTHO05D005410 4.4e-27 124.4 84 71.4
THA.LOC104813834 Tarenaya hassleriana HOM05D002092 ORTHO05D005410 4.4e-27 124.4 80 72.5
Oeu063755.1 Olea europaea HOM05D002092 ORTHO05D005410 5.8e-27 124.0 78 74.4
Os03g0774300 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D005410 9.9e-27 123.2 79 73.4
A07p40800 Brassica napus HOM05D002092 ORTHO05D005410 1.3e-26 122.9 76 76.3
BraA07t31622Z Brassica rapa HOM05D002092 ORTHO05D005410 1.3e-26 122.9 76 76.3
CSS0046649 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D005410 1.7e-26 122.5 83 69.9
MD15G1027200 Malus domestica HOM05D002092 ORTHO05D005410 1.7e-26 122.5 76 73.7
HPP92_017685 Vanilla planifolia HOM05D002092 ORTHO05D005410 1.7e-26 122.5 76 73.7
Aqoxy5G01636 Aquilegia oxysepala HOM05D002092 ORTHO05D005410 2.2e-26 122.1 76 73.7
Zm00001eb059100 Zea mays HOM05D002092 ORTHO05D005410 3.7e-26 121.3 79 74.7
Lsat_1_v5_gn_1_18740 Lactuca sativa HOM05D002092 ORTHO05D005410 6.4e-26 120.6 76 76.3
C06p49190 Brassica napus HOM05D002092 ORTHO05D005410 8.3e-26 120.2 76 73.7
BolC6t39952H Brassica oleracea HOM05D002092 ORTHO05D005410 1.1e-25 119.8 76 73.7
Sed0009494 Sechium edule HOM05D002092 ORTHO05D005410 1.1e-25 119.8 76 73.7
ECA247G0066 Erigeron canadensis HOM05D002092 ORTHO05D005410 3.2e-25 118.2 76 73.7
Oeu007019.3 Olea europaea HOM05D002092 ORTHO05D005410 4.1e-25 117.9 75 73.3
SEGI_27952 Sequoiadendron giganteum HOM05D002092 ORTHO05D005410 5.4e-25 117.5 75 74.7
PGR083G1162 Punica granatum HOM05D002092 ORTHO05D005410 1.2e-24 116.3 83 63.9
HanXRQChr02g0039761 Helianthus annuus HOM05D002092 ORTHO05D005410 2.1e-24 115.5 74 73.0
Lj4C786T3 Lonicera japonica HOM05D002092 ORTHO05D005410 2.7e-24 115.2 69 76.8
HanXRQChr04g0105681 Helianthus annuus HOM05D002092 ORTHO05D005410 7.8e-24 113.6 76 68.4
HanXRQChr04g0105691 Helianthus annuus HOM05D002092 ORTHO05D005410 1.3e-23 112.8 76 68.4
unitig_26.g9835 Utricularia gibba HOM05D002092 ORTHO05D005410 5.1e-23 110.9 70 72.9
Mapoly0091s0018 Marchantia polymorpha HOM05D002092 ORTHO05D005410 1.1e-22 109.8 76 64.5
Ca_05955_v3 Cicer arietinum L. HOM05D002092 ORTHO05D005410 1.9e-22 109.0 78 62.8
AUR62038819 Chenopodium quinoa HOM05D002092 ORTHO05D005410 2.5e-22 108.6 59 83.1
Nn5g29609 Nelumbo nucifera HOM05D002092 ORTHO05D005410 7.3e-22 107.1 59 81.4
Haze_17963 Corylus avellana HOM05D002092 ORTHO05D005410 1.2e-21 106.3 87 63.2
Pp3c1_23010 Physcomitrium patens HOM05D002092 ORTHO05D005410 8.1e-21 103.6 72 66.7
SMO356G0200 Selaginella moellendorffii HOM05D002092 ORTHO05D005410 1.8e-20 102.4 78 61.5
AagrBONN_evm.TU.Sc2ySwM_340.1002 Anthoceros agrestis HOM05D002092 ORTHO05D031203 5.2e-20 100.9 71 67.6
CBR_g4376 Chara braunii HOM05D002092 ORTHO05D005410 5.2e-20 100.9 75 64.0
Pp3c14_2770 Physcomitrium patens HOM05D002092 ORTHO05D005410 6.8e-20 100.5 70 65.7
COL.COLO4_26310 Corchorus olitorius HOM05D002092 ORTHO05D005410 3.8e-18 94.7 62 72.6
PRCOL_00001743 Prasinoderma coloniale HOM05D002092 ORTHO05D005410 7.8e-16 87.0 79 53.2
Cpa.g.sc36.81 Carica papaya HOM05D002092 ORTHO05D005410 1.3e-15 86.3 73 61.6
Cre10.g456900 Chlamydomonas reinhardtii HOM05D002092 ORTHO05D005410 2.3e-15 85.5 73 56.2
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 2.3e-15 85.5 50 80.0
ECA246G1239 Erigeron canadensis HOM05D002092 ORTHO05D005410 1.5e-14 82.8 50 72.0
AagrBONN_evm.TU.Sc2ySwM_368.399 Anthoceros agrestis HOM05D002092 ORTHO05D005410 2.5e-14 82.0 71 57.7
MCO02G255 Micromonas commoda HOM05D002092 ORTHO05D005410 3.3e-14 81.6 69 55.1
SGA_v2.0_scaffold54G19516 Striga asiatica HOM05D002092 ORTHO05D005410 9.6e-14 80.1 83 55.4
SHI08155 Sapria himalayana HOM05D002092 ORTHO05D005410 1.3e-10 69.7 39 79.5
C06p32740 Brassica napus HOM05D002092 ORTHO05D005410 4.6e-08 61.2 58 50.0


User provided reference genes

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