Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.4e-139 498.8 251 100.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 4.6e-122 441.4 234 94.9
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 4.6e-106 388.3 219 86.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.9e-105 385.2 220 87.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.5e-104 383.3 227 82.8
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.2e-100 369.4 227 79.7
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 5.1e-97 358.2 228 75.9
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.3e-96 355.5 225 74.7
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.3e-96 355.1 225 76.0
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.8e-95 352.4 225 74.7
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.0e-93 346.3 224 75.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 2.6e-93 345.9 224 74.1
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.4e-93 345.1 233 71.7
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 8.4e-92 340.9 227 75.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.4e-91 340.1 223 74.4
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.9e-91 339.7 224 71.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-91 339.3 224 73.2
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.2e-91 339.0 228 75.9
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 5.4e-91 338.2 224 72.8
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.2e-90 337.0 223 72.2
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-90 336.7 224 72.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.6e-90 336.7 224 72.8
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.7e-90 335.9 224 73.7
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.0e-90 334.7 225 71.6
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.3e-89 332.8 225 71.1
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.3e-89 332.8 225 71.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.9e-89 332.0 230 69.6
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 6.6e-89 331.3 225 70.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 8.7e-89 330.9 224 72.8
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 4.3e-88 328.6 224 70.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.6e-88 327.4 224 71.0
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.6e-88 327.4 224 71.0
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.3e-87 327.0 225 69.3
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.6e-87 326.6 221 71.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.8e-87 325.9 223 70.0
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 4.8e-87 325.1 224 70.5
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.8e-87 325.1 224 70.5
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.1e-86 323.9 225 68.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.2e-85 320.5 221 70.1
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.5e-85 320.1 225 68.9
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.5e-85 320.1 229 66.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.6e-85 319.3 247 63.2
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.4e-85 318.9 224 69.6
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.5e-85 318.5 222 68.5
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.5e-85 318.5 221 70.6
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.8e-85 318.2 225 68.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 5.8e-85 318.2 220 72.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 7.6e-85 317.8 226 67.3
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 9.9e-85 317.4 229 65.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.7e-84 316.6 220 69.1
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.7e-84 316.6 225 71.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.9e-84 315.8 225 68.0
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 3.8e-84 315.5 226 68.6
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 3.8e-84 315.5 219 70.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 4.9e-84 315.1 226 66.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 6.4e-84 314.7 227 65.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 6.4e-84 314.7 223 68.6
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.1e-83 313.9 224 64.3
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.4e-83 313.5 224 67.0
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 5.4e-83 311.6 221 69.2
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.1e-82 309.7 220 69.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.1e-82 309.7 220 69.1
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.7e-82 309.3 225 67.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.5e-82 308.9 224 64.3
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 6.0e-82 308.1 221 67.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 6.0e-82 308.1 220 69.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 6.0e-82 308.1 218 67.0
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.3e-81 306.2 220 66.8
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.3e-81 306.2 224 62.9
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.9e-81 305.4 192 73.4
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 8.7e-81 304.3 221 65.6
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.3e-80 302.4 232 62.9
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 5.6e-80 301.6 223 64.6
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 9.6e-80 300.8 224 66.1
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.3e-79 300.4 203 71.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.1e-79 297.7 224 65.2
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.8e-78 296.6 224 65.2
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.8e-78 296.6 252 59.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.8e-78 296.6 223 63.2
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.4e-78 296.2 224 64.3
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-77 293.9 224 64.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.0e-77 293.1 225 70.7
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.6e-77 292.7 227 62.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-76 290.8 220 63.2
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.0e-76 290.8 216 63.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.3e-76 290.4 226 62.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.3e-76 290.4 219 62.6
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 1.7e-76 290.0 202 71.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 6.5e-76 288.1 224 61.2
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.4e-76 287.7 218 64.7
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 8.4e-76 287.7 214 66.4
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-75 286.6 222 62.6
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-75 286.2 220 62.7
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.5e-75 286.2 220 62.7
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 3.2e-75 285.8 282 56.0
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.5e-75 285.0 224 62.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.1e-75 284.6 218 64.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 7.1e-75 284.6 220 62.3
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 7.1e-75 284.6 222 62.6
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 7.1e-75 284.6 220 62.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 7.1e-75 284.6 220 62.3
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 7.1e-75 284.6 222 62.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 7.1e-75 284.6 254 57.9
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.1e-74 283.1 225 62.7
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.1e-74 283.1 225 62.7
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 6.0e-74 281.6 222 61.7
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 6.0e-74 281.6 222 61.7
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.3e-73 280.4 220 63.2
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.8e-73 280.0 222 62.2
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 5.1e-73 278.5 219 63.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.7e-73 277.7 224 62.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.7e-73 277.7 223 60.1
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 8.7e-73 277.7 231 63.2
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.3e-72 275.8 186 71.5
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 7.4e-72 274.6 212 62.7
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 9.6e-72 274.2 186 70.4
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.6e-71 273.5 229 58.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-70 270.8 250 56.4
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-70 270.4 229 57.6
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.4e-70 269.6 193 66.8
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.3e-68 263.8 224 58.9
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.7e-68 263.5 160 76.2
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.7e-66 256.1 195 62.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.8e-65 253.4 234 54.7
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.8e-65 253.4 234 54.7
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.3e-65 253.1 188 64.4
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 2.5e-64 249.6 199 57.3
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 8.2e-63 244.6 207 58.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.4e-62 243.0 205 55.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.2e-60 236.5 157 70.1
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.5e-60 235.0 223 52.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.0e-57 227.6 236 52.1
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.4e-57 227.3 151 72.2
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 8.8e-57 224.6 218 49.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.8e-55 218.8 174 63.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 9.1e-54 214.5 215 51.6
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.0e-52 211.1 151 66.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.3e-52 210.7 181 58.6
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-49 201.1 224 47.3
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.3e-49 199.9 120 78.3
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-48 197.6 222 49.5
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.1e-48 197.6 213 44.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 3.7e-47 192.6 216 45.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 2.4e-46 189.9 120 73.3
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.5e-45 185.7 154 53.9
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.7e-42 176.4 189 45.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-41 173.7 121 69.4
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.2e-31 140.2 154 43.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 4.1e-30 136.0 86 81.4
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.5e-29 132.5 90 75.6
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.5e-28 128.3 124 53.2
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 3.2e-27 126.3 209 34.4
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.4e-22 110.9 73 67.1
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 7.3e-19 98.6 80 57.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.8e-18 96.7 152 38.8
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.8e-18 96.7 152 38.8
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.4e-17 94.4 66 75.8
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 6.8e-17 92.0 74 58.1
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.5e-13 79.7 71 52.1
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.7e-10 69.3 47 59.6
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.8e-08 62.4 59 52.5
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 7.5e-08 62.0 35 74.3


User provided reference genes

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