Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G070902 Glycine max HOM05D003484 ORTHO05D004152 6.7e-96 354.0 176 100.0
Glyma.17G253700 Glycine max HOM05D003484 ORTHO05D004152 9.1e-77 290.4 159 93.1
Lj5g0005857 Lotus japonicus HOM05D003484 ORTHO05D004152 5.5e-74 281.2 159 89.9
arahy.Tifrunner.gnm1.ann1.2B58VD Arachis hypogaea HOM05D003484 ORTHO05D004152 2.7e-73 278.9 159 88.1
arahy.Tifrunner.gnm1.ann1.66HKGP Arachis hypogaea HOM05D003484 ORTHO05D004152 2.7e-73 278.9 159 88.1
Psat5g015440 Pisum sativum HOM05D003484 ORTHO05D004152 1.8e-72 276.2 159 88.1
Manes.05G154900 Manihot esculenta HOM05D003484 ORTHO05D004152 5.2e-72 274.6 159 86.2
Cfa013879 Carpinus fangiana HOM05D003484 ORTHO05D004152 6.8e-72 274.2 159 84.3
Potri.002G031300 Populus trichocarpa HOM05D003484 ORTHO05D004152 8.8e-72 273.9 159 86.2
QL02p009668 Quercus lobata HOM05D003484 ORTHO05D004152 8.8e-72 273.9 159 84.9
VMungo0647G0645 Vigna mungo HOM05D003484 ORTHO05D004152 8.8e-72 273.9 159 87.4
Glyma.06G029300 Glycine max HOM05D003484 ORTHO05D004152 1.2e-71 273.5 159 86.2
Ca_02077_v3 Cicer arietinum L. HOM05D003484 ORTHO05D004152 1.5e-71 273.1 159 86.8
Atru.chr13.405 Acer truncatum HOM05D003484 ORTHO05D004152 2.0e-71 272.7 159 86.2
TPR.G12425 Trifolium pratense HOM05D003484 ORTHO05D004152 2.6e-71 272.3 159 86.2
CSS0040658 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 3.4e-71 271.9 159 86.8
Haze_03844 Corylus avellana HOM05D003484 ORTHO05D004152 3.4e-71 271.9 159 86.2
Lj1g0000425 Lotus japonicus HOM05D003484 ORTHO05D004152 3.4e-71 271.9 159 86.2
Sabra02G0025100 Salix brachista HOM05D003484 ORTHO05D004152 3.4e-71 271.9 159 86.2
MD15G1022300 Malus domestica HOM05D003484 ORTHO05D004152 4.4e-71 271.6 159 84.3
Ciclev10001031m.g Citrus clementina HOM05D003484 ORTHO05D004152 9.8e-71 270.4 159 83.6
Phvul.009G060600 Phaseolus vulgaris HOM05D003484 ORTHO05D004152 1.3e-70 270.0 159 84.9
Cfa006912 Carpinus fangiana HOM05D003484 ORTHO05D004152 2.2e-70 269.2 159 84.9
GSVIVG01009775001 Vitis vinifera HOM05D003484 ORTHO05D004152 2.2e-70 269.2 159 83.0
Eucgr.F01601 Eucalyptus grandis HOM05D003484 ORTHO05D004152 2.8e-70 268.9 159 84.3
Nn5g29711 Nelumbo nucifera HOM05D003484 ORTHO05D004152 2.8e-70 268.9 159 84.9
Prupe.1G374100 Prunus persica HOM05D003484 ORTHO05D004152 2.8e-70 268.9 159 83.6
Rhsim07G0243200 Rhododendron simsii HOM05D003484 ORTHO05D004152 2.8e-70 268.9 159 86.8
TAR381G1532 Trochodendron aralioides HOM05D003484 ORTHO05D004152 4.8e-70 268.1 159 83.6
Aqoxy6G01198 Aquilegia oxysepala HOM05D003484 ORTHO05D004152 6.3e-70 267.7 159 83.0
FAN26G2370 Fragaria x ananassa HOM05D003484 ORTHO05D004152 6.3e-70 267.7 159 83.0
RcHm_v2.0_Chr6g0301701 Rosa chinensis HOM05D003484 ORTHO05D004152 1.1e-69 266.9 159 83.0
Actinidia29806 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.4e-69 266.5 159 83.6
COL.COLO4_26239 Corchorus olitorius HOM05D003484 ORTHO05D004152 1.4e-69 266.5 159 83.0
FAN27G3362 Fragaria x ananassa HOM05D003484 ORTHO05D004152 1.4e-69 266.5 159 82.4
Medtr3g112280 Medicago truncatula HOM05D003484 ORTHO05D004152 1.4e-69 266.5 159 84.9
Thecc.01G027500 Theobroma cacao HOM05D003484 ORTHO05D004152 1.8e-69 266.2 159 81.8
FAN20G2901 Fragaria x ananassa HOM05D003484 ORTHO05D004152 2.4e-69 265.8 159 83.0
Sc26g0003390 Simmondsia chinensis HOM05D003484 ORTHO05D004152 4.1e-69 265.0 159 83.0
FAN15G3469 Fragaria x ananassa HOM05D003484 ORTHO05D004152 5.4e-69 264.6 159 81.8
QL06p035065 Quercus lobata HOM05D003484 ORTHO05D004152 5.4e-69 264.6 159 83.6
CiPaw.08G060800 Carya illinoinensis HOM05D003484 ORTHO05D004152 7.0e-69 264.2 159 81.8
Cc10_g02440 Coffea canephora HOM05D003484 ORTHO05D004152 7.0e-69 264.2 159 82.4
PSO210G1712 Papaver somniferum HOM05D003484 ORTHO05D004152 7.0e-69 264.2 159 79.9
Atru.chr3.681 Acer truncatum HOM05D003484 ORTHO05D004152 9.1e-69 263.8 159 81.8
PSO447G0175 Papaver somniferum HOM05D003484 ORTHO05D004152 9.1e-69 263.8 159 79.9
RcHm_v2.0_Chr2g0100451 Rosa chinensis HOM05D003484 ORTHO05D004152 1.2e-68 263.5 159 82.4
Ciclev10025538m.g Citrus clementina HOM05D003484 ORTHO05D004152 1.6e-68 263.1 159 81.8
Duzib147G0644 Durio zibethinus HOM05D003484 ORTHO05D004152 2.0e-68 262.7 159 81.1
THA.LOC104813813 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 2.7e-68 262.3 159 79.2
Cpa.g.sc99.5 Carica papaya HOM05D003484 ORTHO05D004152 3.5e-68 261.9 159 80.5
PGR119G1492 Punica granatum HOM05D003484 ORTHO05D004152 3.5e-68 261.9 159 83.0
VMungo1309G0336 Vigna mungo HOM05D003484 ORTHO05D004152 4.5e-68 261.5 159 81.8
Haze_22558 Corylus avellana HOM05D003484 ORTHO05D004152 7.7e-68 260.8 187 72.2
Duzib093G1138 Durio zibethinus HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 81.1
FvH4_1g12520 Fragaria vesca HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 81.1
FAN19G1806 Fragaria x ananassa HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 81.1
Lalb_Chr14g0369551 Lupinus albus HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 82.4
Manes.02G098300 Manihot esculenta HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 81.1
Sed0018306 Sechium edule HOM05D003484 ORTHO05D004152 7.7e-68 260.8 159 81.1
CiPaw.07G051700 Carya illinoinensis HOM05D003484 ORTHO05D004152 1.0e-67 260.4 159 82.4
MBI10_g00745_MAGBIO Magnolia biondii HOM05D003484 ORTHO05D004152 1.0e-67 260.4 159 79.9
Potri.005G118800 Populus trichocarpa HOM05D003484 ORTHO05D004152 1.0e-67 260.4 159 79.9
Prupe.7G161700 Prunus persica HOM05D003484 ORTHO05D004152 1.0e-67 260.4 159 81.8
Sabra05G0097900 Salix brachista HOM05D003484 ORTHO05D004152 1.0e-67 260.4 159 79.9
Thhalv10018489m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 1.3e-67 260.0 159 79.9
Thecc.08G033900 Theobroma cacao HOM05D003484 ORTHO05D004152 1.3e-67 260.0 159 81.8
CANSAT01G1008 Cannabis sativa HOM05D003484 ORTHO05D004152 1.7e-67 259.6 159 79.9
CANSAT25G0607 Cannabis sativa HOM05D003484 ORTHO05D004152 1.7e-67 259.6 159 79.2
Carub.0002s2229 Capsella rubella HOM05D003484 ORTHO05D004152 1.7e-67 259.6 159 80.5
FAN23G1432 Fragaria x ananassa HOM05D003484 ORTHO05D004152 1.7e-67 259.6 159 81.1
Hma1.2p1_0775F.1_g216570 Hydrangea macrophylla HOM05D003484 ORTHO05D004152 1.7e-67 259.6 159 79.9
Dinv40029 Davidia involucrata HOM05D003484 ORTHO05D004152 2.3e-67 259.2 159 81.1
FAN26G2451 Fragaria x ananassa HOM05D003484 ORTHO05D004152 2.3e-67 259.2 159 80.5
Lsat_1_v5_gn_4_151800 Lactuca sativa HOM05D003484 ORTHO05D004152 2.3e-67 259.2 159 80.5
Lalb_Chr11g0062181 Lupinus albus HOM05D003484 ORTHO05D004152 2.3e-67 259.2 159 81.1
PGR083G0895 Punica granatum HOM05D003484 ORTHO05D004152 2.3e-67 259.2 159 79.2
Duzib264G1245 Durio zibethinus HOM05D003484 ORTHO05D004152 2.9e-67 258.8 159 80.5
Hund26891 Selenicereus undatus HOM05D003484 ORTHO05D004152 2.9e-67 258.8 159 79.9
HanXRQChr09g0261231 Helianthus annuus HOM05D003484 ORTHO05D004152 3.8e-67 258.5 159 80.5
Sp5g30560 Schrenkiella parvula HOM05D003484 ORTHO05D004152 3.8e-67 258.5 159 79.2
AL2G35370 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 5.0e-67 258.1 159 79.2
ECA232G1269 Erigeron canadensis HOM05D003484 ORTHO05D004152 5.0e-67 258.1 159 80.5
Lj2A458T67 Lonicera japonica HOM05D003484 ORTHO05D004152 5.0e-67 258.1 159 79.9
Lj4A208T85 Lonicera japonica HOM05D003484 ORTHO05D004152 5.0e-67 258.1 159 79.2
ClCG09G002810 Citrullus lanatus HOM05D003484 ORTHO05D004152 6.5e-67 257.7 159 79.9
COL.COLO4_22006 Corchorus olitorius HOM05D003484 ORTHO05D004152 8.6e-67 257.3 159 79.2
ECA246G2959 Erigeron canadensis HOM05D003484 ORTHO05D004152 1.5e-66 256.5 159 79.9
TWI09G1204 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 1.5e-66 256.5 159 81.8
AT1G75420 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 1.9e-66 256.1 159 79.9
CARHR068810 Cardamine hirsuta HOM05D003484 ORTHO05D004152 2.5e-66 255.8 159 78.6
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 2.5e-66 255.8 159 79.2
FAN28G1582 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.2e-66 255.4 159 79.9
Gorai.003G012600 Gossypium raimondii HOM05D003484 ORTHO05D004152 4.2e-66 255.0 159 78.0
MD02G1139400 Malus domestica HOM05D003484 ORTHO05D004152 4.2e-66 255.0 159 79.9
AUR62014479 Chenopodium quinoa HOM05D003484 ORTHO05D004152 5.5e-66 254.6 159 79.2
Gohir.A11G181400 Gossypium hirsutum HOM05D003484 ORTHO05D004152 5.5e-66 254.6 159 78.6
Gohir.D05G193800 Gossypium hirsutum HOM05D003484 ORTHO05D004152 5.5e-66 254.6 159 79.2
Gorai.007G199800 Gossypium raimondii HOM05D003484 ORTHO05D004152 5.5e-66 254.6 159 78.6
Gorai.009G198800 Gossypium raimondii HOM05D003484 ORTHO05D004152 5.5e-66 254.6 159 79.2
AUR62034522 Chenopodium quinoa HOM05D003484 ORTHO05D004152 7.2e-66 254.2 159 78.6
Gohir.A05G190400 Gossypium hirsutum HOM05D003484 ORTHO05D004152 7.2e-66 254.2 159 79.2
Solyc02g084820.3 Solanum lycopersicum HOM05D003484 ORTHO05D004152 7.2e-66 254.2 159 76.7
CSS0005468 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 9.5e-66 253.8 159 79.9
MELO3C023411.2 Cucumis melo HOM05D003484 ORTHO05D004152 9.5e-66 253.8 159 78.6
Gohir.A02G167700 Gossypium hirsutum HOM05D003484 ORTHO05D004152 1.2e-65 253.4 159 78.6
Gohir.D11G188000 Gossypium hirsutum HOM05D003484 ORTHO05D004152 1.2e-65 253.4 159 78.0
Sopen02g029490 Solanum pennellii HOM05D003484 ORTHO05D004152 1.2e-65 253.4 159 76.1
Actinidia26094 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.6e-65 253.1 159 79.2
Gohir.D03G012300 Gossypium hirsutum HOM05D003484 ORTHO05D004152 1.6e-65 253.1 159 78.0
PGSC0003DMG400003612 Solanum tuberosum HOM05D003484 ORTHO05D004152 1.6e-65 253.1 159 76.1
TWI73G0581 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 1.6e-65 253.1 159 80.5
Aa31LG4G5630 Aethionema arabicum HOM05D003484 ORTHO05D004152 2.8e-65 252.3 159 77.4
Aa31LG7G4290 Aethionema arabicum HOM05D003484 ORTHO05D004152 2.8e-65 252.3 159 77.4
Nitab4.5_0000723g0130 Nicotiana tabacum HOM05D003484 ORTHO05D004152 2.8e-65 252.3 159 76.7
SalBow1G0941 Salvia bowleyana HOM05D003484 ORTHO05D004152 2.8e-65 252.3 159 76.7
ATR1154G013 Amborella trichopoda HOM05D003484 ORTHO05D004152 3.6e-65 251.9 159 77.4
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 4.7e-65 251.5 159 77.4
SEGI_00807 Sequoiadendron giganteum HOM05D003484 ORTHO05D004152 4.7e-65 251.5 159 77.4
MD15G1252500 Malus domestica HOM05D003484 ORTHO05D004152 8.0e-65 250.8 159 78.0
Nitab4.5_0003883g0010 Nicotiana tabacum HOM05D003484 ORTHO05D004152 1.0e-64 250.4 159 76.7
PSO541G2144 Papaver somniferum HOM05D003484 ORTHO05D004152 1.4e-64 250.0 159 77.4
CAN.G358.31 Capsicum annuum HOM05D003484 ORTHO05D004152 1.8e-64 249.6 159 74.8
Cc07_g10050 Coffea canephora HOM05D003484 ORTHO05D004152 1.8e-64 249.6 159 77.4
Peaxi162Scf00418g00928 Petunia axillaris HOM05D003484 ORTHO05D004152 2.3e-64 249.2 161 77.0
DCAR_017312 Daucus carota HOM05D003484 ORTHO05D004152 8.8e-64 247.3 159 77.4
PSO675G7417 Papaver somniferum HOM05D003484 ORTHO05D004152 8.8e-64 247.3 159 76.7
CSS0022746 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 1.2e-63 246.9 159 77.4
Thhalv10007509m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 1.5e-63 246.5 160 77.5
SGA_v2.0_scaffold326G48736 Striga asiatica HOM05D003484 ORTHO05D004152 1.5e-63 246.5 159 78.0
AL1G32430 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 2.0e-63 246.1 160 76.9
Migut.N00471 Erythranthe guttata HOM05D003484 ORTHO05D004152 2.0e-63 246.1 159 78.0
BcaB07g31984 Brassica carinata HOM05D003484 ORTHO05D004152 2.6e-63 245.7 160 76.9
Carub.0001s1925 Capsella rubella HOM05D003484 ORTHO05D004152 3.4e-63 245.4 160 76.9
AT1G19710 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 4.4e-63 245.0 160 76.9
C05p18150 Brassica napus HOM05D003484 ORTHO05D004152 2.8e-62 242.3 160 75.6
BraA06t24693Z Brassica rapa HOM05D003484 ORTHO05D004152 2.8e-62 242.3 160 75.0
BolC5t30522H Brassica oleracea HOM05D003484 ORTHO05D004152 3.7e-62 241.9 160 75.6
Rhsim08G0122800 Rhododendron simsii HOM05D003484 ORTHO05D004152 3.7e-62 241.9 181 69.1
A06p15830 Brassica napus HOM05D003484 ORTHO05D004152 6.3e-62 241.1 160 75.0
GSVIVG01018875001 Vitis vinifera HOM05D003484 ORTHO05D004152 6.3e-62 241.1 159 74.2
HPP92_016115 Vanilla planifolia HOM05D003484 ORTHO05D004152 8.3e-62 240.7 159 74.2
unitig_26.g10035 Utricularia gibba HOM05D003484 ORTHO05D004152 1.1e-61 240.4 159 74.8
MSTRG.24276 Avicennia marina HOM05D003484 ORTHO05D004152 1.8e-61 239.6 159 74.8
CARHR020230 Cardamine hirsuta HOM05D003484 ORTHO05D004152 1.8e-61 239.6 159 75.5
Os01g0262600 Oryza sativa ssp. japonica HOM05D003484 ORTHO05D004152 5.4e-61 238.0 159 71.7
vmacro17721 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 5.4e-61 238.0 194 64.9
Glyma.04G029333 Glycine max HOM05D003484 ORTHO05D004152 1.3e-59 233.4 137 85.4
EL10Ac1g00611 Beta vulgaris HOM05D003484 ORTHO05D004152 1.7e-59 233.0 194 62.9
vmacro22965 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 1.7e-59 233.0 152 76.3
Sed0000171 Sechium edule HOM05D003484 ORTHO05D004152 3.8e-59 231.9 161 73.3
THA.LOC104809282 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 3.3e-58 228.8 195 62.1
HanXRQChr13g0393851 Helianthus annuus HOM05D003484 ORTHO05D004152 1.2e-57 226.9 193 62.7
Lsat_1_v5_gn_3_74821 Lactuca sativa HOM05D003484 ORTHO05D004152 6.4e-54 214.5 137 78.8
CSS0044139 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 5.4e-53 211.5 140 77.9
Zm00001eb128410 Zea mays HOM05D003484 ORTHO05D004152 5.4e-53 211.5 138 74.6
FvH4_2g39300 Fragaria vesca HOM05D003484 ORTHO05D004152 4.6e-52 208.4 159 69.2
vmacro17718 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 7.8e-52 207.6 165 66.7
SMO140G0050 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 7.3e-42 174.5 159 54.7
CARHR034620 Cardamine hirsuta HOM05D003484 ORTHO05D004152 2.1e-41 172.9 132 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3091 Anthoceros agrestis HOM05D003484 ORTHO05D004152 1.8e-40 169.9 162 54.3
vmacro17803 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 5.8e-39 164.9 107 76.6
Sp1g17540 Schrenkiella parvula HOM05D003484 ORTHO05D004152 8.3e-38 161.0 97 80.4
Pp3c9_7950 Physcomitrium patens HOM05D003484 ORTHO05D004152 1.0e-35 154.1 160 49.4
Hund30416 Selenicereus undatus HOM05D003484 ORTHO05D004152 5.2e-32 141.7 92 76.1
Ah.14g085970 Amaranthus hybridus HOM05D003484 ORTHO05D004152 6.0e-28 128.3 87 70.1
Dinv39458 Davidia involucrata HOM05D003484 ORTHO05D004152 1.7e-27 126.7 72 83.3
Hund30417 Selenicereus undatus HOM05D003484 ORTHO05D004152 2.5e-26 122.9 78 76.9
Ah.14g085980 Amaranthus hybridus HOM05D003484 ORTHO05D004152 5.2e-24 115.2 98 61.2
Rhsim08G0122700 Rhododendron simsii HOM05D003484 ORTHO05D004152 1.0e-19 100.9 100 57.0
QL04p030830 Quercus lobata HOM05D002629 ORTHO05D021498 7.6e-15 84.7 60 68.3
Actinidia19218 Actinidia chinensis HOM05D003484 ORTHO05D004152 3.5e-12 75.9 159 34.6
SMO140G0011 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 1.3e-11 73.9 126 37.3
Medtr3g112270 Medicago truncatula HOM05D003484 ORTHO05D004152 1.3e-09 67.4 75 52.0
SMO338G0002 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 9.0e-08 61.2 136 38.2
CARHR218780 Cardamine hirsuta HOM05D003484 ORTHO05D004152 3.4e-07 59.3 33 75.8


User provided reference genes

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