Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 6.6e-125 450.7 219 100.0
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 7.5e-121 437.2 219 97.3
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.2e-118 429.9 222 95.9
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 2.9e-104 382.1 222 86.0
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 5.4e-103 377.9 220 86.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.5e-97 359.8 218 80.3
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.4e-97 358.6 223 80.3
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 4.1e-95 351.7 219 80.4
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 5.4e-95 351.3 223 78.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.9e-92 342.8 228 75.4
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-90 337.0 223 77.1
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.3e-88 330.1 231 72.3
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.9e-84 316.2 224 71.0
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 4.3e-84 315.1 219 70.3
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 5.6e-84 314.7 219 70.8
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 9.6e-84 313.9 216 70.8
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 4.8e-83 311.6 225 70.2
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.8e-83 311.6 250 68.4
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 6.2e-83 311.2 232 69.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.1e-82 308.9 226 68.6
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.3e-82 308.1 222 69.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 2.6e-81 305.8 219 67.1
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 3.4e-81 305.4 191 73.8
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 4.5e-81 305.1 223 72.6
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 7.6e-81 304.3 223 69.1
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 7.6e-81 304.3 219 67.1
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.7e-80 303.1 226 68.1
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.8e-80 302.0 187 75.4
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 3.8e-80 302.0 194 73.7
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 4.9e-80 301.6 221 66.1
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.4e-80 300.8 225 67.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.4e-79 300.1 220 69.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 5.4e-79 298.1 200 74.0
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 9.3e-79 297.4 222 67.6
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.2e-78 297.0 229 66.8
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.7e-78 295.8 219 65.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 3.5e-78 295.4 220 68.2
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 6.0e-78 294.7 225 66.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.3e-77 293.5 194 70.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.3e-77 293.5 221 66.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.7e-77 293.1 223 67.3
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 5.1e-77 291.6 224 66.1
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 5.1e-77 291.6 226 63.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 5.1e-77 291.6 224 64.7
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 8.7e-77 290.8 227 63.9
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.1e-76 290.4 220 68.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.1e-76 290.4 221 66.1
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.5e-76 290.0 227 64.8
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.9e-76 289.7 230 64.8
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.9e-76 289.7 223 65.0
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 2.5e-76 289.3 227 63.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.5e-76 289.3 231 64.5
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.5e-76 289.3 230 64.8
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 3.3e-76 288.9 207 66.7
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 3.3e-76 288.9 204 72.5
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 4.3e-76 288.5 225 64.9
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.6e-76 288.1 204 68.6
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 5.6e-76 288.1 222 64.4
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 9.6e-76 287.3 220 65.5
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 9.6e-76 287.3 192 70.8
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 8.1e-75 284.3 205 69.8
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.8e-74 283.1 217 66.8
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 5.3e-74 281.6 175 74.3
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 1.2e-73 280.4 204 68.6
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 5.8e-73 278.1 196 68.4
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.7e-72 276.6 223 67.3
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.2e-72 276.2 173 76.3
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.9e-72 275.8 174 76.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 4.9e-72 275.0 224 65.6
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 4.9e-72 275.0 202 69.8
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.1e-71 273.9 221 65.2
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.1e-71 273.9 176 72.7
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.9e-71 273.1 221 64.7
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 3.2e-71 272.3 221 64.7
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 3.2e-71 272.3 221 64.7
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 5.5e-71 271.6 173 74.0
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 7.1e-71 271.2 215 63.3
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 9.3e-71 270.8 220 65.5
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.2e-70 270.4 213 59.6
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 4.6e-70 268.5 222 64.0
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 6.0e-70 268.1 221 63.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.3e-69 266.9 175 74.3
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 2.3e-69 266.2 207 65.7
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.1e-68 263.8 165 73.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.1e-68 263.8 165 73.9
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.5e-68 263.5 225 63.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.6e-68 260.8 222 59.9
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.6e-67 260.0 178 71.3
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 3.7e-67 258.8 180 66.7
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.3e-66 255.0 151 78.8
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 9.0e-66 254.2 155 76.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 9.0e-66 254.2 159 73.6
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.2e-65 253.8 220 60.5
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 3.4e-65 252.3 187 65.2
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.4e-63 246.9 178 63.5
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.9e-63 246.5 169 66.9
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.5e-63 246.1 152 75.0
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.2e-63 245.7 227 58.1
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 3.2e-63 245.7 197 60.4
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 4.6e-62 241.9 179 62.6
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 8.7e-61 237.7 231 55.8
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.5e-60 236.1 184 66.3
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.0e-56 224.2 150 67.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.9e-56 222.6 172 66.9
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.7e-51 205.7 210 54.8
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.8e-50 203.4 230 50.9
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.6e-49 199.5 166 63.3
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.6e-49 199.5 157 66.9
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.0e-48 197.6 194 48.5
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.0e-48 197.6 219 50.2
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 7.4e-44 181.4 110 76.4
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 7.7e-41 171.4 110 70.0
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.0e-40 171.0 125 68.8
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.7e-40 170.2 113 71.7
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.1e-38 161.8 95 80.0
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.0e-37 159.5 96 74.0
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.8e-34 150.2 95 76.8
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 4.5e-33 145.6 138 55.1
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.5e-31 139.8 76 82.9
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 2.7e-30 136.3 157 45.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.6e-28 129.8 115 56.5
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 4.1e-26 122.5 83 66.3
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.7e-25 119.8 143 50.3
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.2e-23 112.5 106 55.7
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.1e-22 110.2 90 60.0
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.4e-21 107.5 81 63.0
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 4.0e-21 105.9 90 57.8
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.2e-19 100.1 77 66.2
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.0e-18 95.1 55 78.2
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 2.9e-16 89.7 59 72.9
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.8e-13 80.5 72 58.3


User provided reference genes

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