Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 1.0e-35 152.9 78 100.0
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.7e-35 152.1 78 98.7
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.7e-33 144.8 78 92.3
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 6.1e-33 143.7 78 92.3
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 2.0e-31 138.7 78 88.5
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 2.0e-31 138.7 78 88.5
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.6e-31 138.3 78 87.2
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 3.4e-31 137.9 78 87.2
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 3.4e-31 137.9 78 87.2
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 9.8e-31 136.3 78 87.2
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 2.2e-30 135.2 78 85.9
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.2e-30 135.2 78 85.9
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 3.7e-30 134.4 78 83.3
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 4.8e-30 134.0 78 83.3
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-29 132.9 78 83.3
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.1e-29 132.9 78 83.3
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 1.1e-29 132.9 78 82.1
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 1.4e-29 132.5 78 82.1
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.8e-29 132.1 78 83.3
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 82.1
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 83.3
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.1e-29 131.0 78 79.5
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 4.1e-29 131.0 78 80.8
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.4e-29 130.6 78 83.3
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 5.4e-29 130.6 78 83.3
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 9.1e-29 129.8 78 83.3
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.2e-28 129.4 78 79.5
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.2e-28 129.4 79 82.3
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-28 129.4 78 78.2
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.0e-28 128.6 78 80.8
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 79.5
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 79.5
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 78.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 80.8
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 3.5e-28 127.9 78 78.2
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 3.5e-28 127.9 78 83.3
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 5.9e-28 127.1 78 79.5
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 5.9e-28 127.1 78 79.5
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 7.7e-28 126.7 78 79.5
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.0e-27 126.3 78 80.8
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.0e-27 126.3 78 79.5
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.7e-27 125.6 78 78.2
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 1.7e-27 125.6 78 78.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.2e-27 125.2 77 79.2
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.9e-27 124.8 74 82.4
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 2.9e-27 124.8 78 79.5
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.1e-26 122.9 78 78.2
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-26 121.7 77 75.3
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.5e-26 121.7 78 78.2
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 3.2e-26 121.3 78 74.4
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 5.5e-26 120.6 79 77.2
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 7.2e-26 120.2 78 75.6
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 2.1e-25 118.6 78 74.4
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.1e-25 118.6 78 75.6
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.7e-25 118.2 78 73.1
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.6e-25 117.9 79 74.7
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.6e-25 117.9 78 75.6
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 4.7e-25 117.5 78 76.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 6.1e-25 117.1 77 72.7
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 6.1e-25 117.1 78 78.2
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 8.0e-25 116.7 78 73.1
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.0e-24 116.3 73 79.5
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.0e-24 116.3 78 74.4
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.3e-24 115.2 78 69.2
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.3e-24 115.2 78 70.5
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 3.0e-24 114.8 78 71.8
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 4.0e-24 114.4 78 73.1
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 6.8e-24 113.6 78 70.5
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 6.8e-24 113.6 78 73.1
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 6.8e-24 113.6 78 73.1
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 8.8e-24 113.2 78 70.5
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.2e-23 112.8 78 70.5
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.5e-23 112.5 76 72.4
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.5e-23 112.5 78 73.1
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.0e-23 112.1 78 70.5
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.6e-23 111.7 75 72.0
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.6e-23 111.7 78 70.5
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.4e-23 111.3 78 69.2
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.4e-23 111.3 78 70.5
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 4.4e-23 110.9 78 70.5
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 4.4e-23 110.9 78 70.5
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 7.5e-23 110.2 78 65.4
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 9.8e-23 109.8 78 66.7
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.3e-22 109.4 74 71.6
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.7e-22 109.0 78 67.9
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.7e-22 109.0 78 67.9
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 65.4
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 8.3e-22 106.7 78 69.2
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 8.3e-22 106.7 78 69.2
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 8.3e-22 106.7 75 69.3
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 8.3e-22 106.7 78 65.4
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 65.4
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 64.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 65.4
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 65.4
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 67.9
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 3.1e-21 104.8 79 65.8
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 64.1
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 66.7
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.4e-21 104.0 78 64.1
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 5.4e-21 104.0 78 62.8
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 5.4e-21 104.0 78 67.9
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 64.1
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 66.7
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 65.4
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 65.4
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 62.8
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 65.4
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 66.7
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 64.1
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 62.8
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 2.7e-20 101.7 78 65.4
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.7e-20 101.7 78 62.8
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 63.3
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 3.5e-20 101.3 79 62.0
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 3.5e-20 101.3 79 62.0
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 3.5e-20 101.3 79 62.0
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 65.8
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 64.1
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 62.0
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 4.5e-20 100.9 78 62.8
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 4.5e-20 100.9 78 62.8
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 5.9e-20 100.5 79 63.3
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.9e-20 100.5 79 62.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 7.7e-20 100.1 79 63.3
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 7.7e-20 100.1 77 62.3
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.7e-20 100.1 78 64.1
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 62.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 60.8
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.3e-19 99.4 79 60.8
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.3e-19 99.4 79 60.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 62.0
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 60.8
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 60.8
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 64.6
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.8e-19 97.8 79 60.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 3.8e-19 97.8 79 60.8
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 8.6e-19 96.7 75 61.3
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 8.6e-19 96.7 78 60.3
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 60.3
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 55.1
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 1.9e-18 95.5 51 88.2
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.9e-18 95.5 79 60.8
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 60.8
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 4.2e-18 94.4 77 58.4
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.2e-18 94.4 63 76.2
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 9.5e-18 93.2 78 56.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.2e-17 92.8 79 58.2
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.6e-17 92.4 78 57.7
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 2.1e-17 92.0 57 73.7
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.1e-17 92.0 52 80.8
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.8e-17 91.7 69 65.2
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.6e-17 91.3 76 57.9
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 4.7e-17 90.9 76 57.9
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 60.3
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 8.0e-17 90.1 78 59.0
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 1.0e-16 89.7 78 56.4
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.4e-16 89.4 77 58.4
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 8.9e-16 86.7 58 70.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 8.9e-16 86.7 78 55.1
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 2.0e-15 85.5 78 56.4
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.0e-15 85.5 72 61.1
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 1.3e-14 82.8 76 51.3
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 6.3e-14 80.5 62 61.3
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.7e-11 72.4 41 80.5
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 6.6e-11 70.5 49 63.3
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.6e-11 70.1 40 80.0
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 1.9e-10 68.9 80 50.0
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.6e-09 65.9 80 47.5
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 8.0e-09 63.5 78 46.2
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.4e-08 62.8 37 75.7
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 3.1e-08 61.6 35 77.1
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.1e-08 61.6 73 47.9
Medtr3g069970 Medicago truncatula HOM05D004100 ORTHO05D004781 6.4e-06 53.9 31 77.4


User provided reference genes

Program Settings