Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.3e-275 951.0 467 100.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.4e-217 759.6 442 87.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-197 693.3 451 78.3
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 9.2e-193 677.2 433 78.5
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.2e-171 607.1 438 67.8
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-169 599.7 449 67.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.0e-168 594.7 444 66.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.3e-167 593.6 449 65.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-166 590.5 459 67.3
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.1e-165 586.3 458 64.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 8.1e-165 584.3 462 63.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 7.6e-163 577.8 458 63.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 9.9e-163 577.4 455 64.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.6e-160 568.5 458 62.7
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.9e-159 565.5 478 60.5
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 7.3e-158 561.2 457 62.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.3e-158 561.2 457 63.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.8e-157 559.3 455 63.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.0e-146 524.2 467 59.5
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.8e-146 522.3 471 56.7
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.5e-145 519.6 443 60.5
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.3e-141 507.3 471 54.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.1e-137 494.2 468 55.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.5e-137 493.0 470 52.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 5.5e-137 491.9 464 55.2
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.6e-136 488.8 465 53.5
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.0e-135 487.6 471 53.3
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.0e-135 487.6 470 53.6
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.8e-135 486.9 468 55.1
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 6.7e-135 485.0 465 54.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.7e-135 484.6 475 53.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.3e-134 482.3 465 53.1
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 7.4e-134 481.5 469 53.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.3e-133 480.7 473 52.6
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.8e-133 478.8 483 51.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.8e-133 478.8 449 54.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.1e-132 477.6 464 52.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.4e-132 477.2 465 53.3
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.9e-132 474.9 466 52.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.9e-132 474.9 483 51.3
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-131 474.2 465 52.3
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.2e-131 474.2 470 51.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.5e-131 473.8 465 51.8
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.5e-131 473.8 448 53.1
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.4e-131 472.6 465 53.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.5e-131 472.2 465 52.9
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.7e-131 471.5 482 50.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.0e-130 471.1 466 52.6
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-130 471.1 459 52.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.3e-130 470.7 477 50.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-130 469.9 465 53.1
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.8e-130 469.2 459 51.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 8.5e-130 468.0 464 51.9
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-129 467.6 459 51.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.4e-129 467.2 469 51.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.9e-129 466.8 470 51.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.9e-129 466.8 468 51.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.5e-129 466.5 470 51.1
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.2e-129 464.9 469 51.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.7e-128 463.0 467 51.4
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.7e-128 463.0 466 52.4
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 7.9e-128 461.5 448 52.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.9e-128 461.5 472 50.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.0e-127 461.1 471 50.1
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-127 460.7 456 51.5
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.9e-127 459.1 471 51.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 5.1e-127 458.8 444 52.5
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 5.1e-127 458.8 461 50.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.8e-127 458.0 468 50.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.1e-126 457.6 461 52.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.0e-126 456.8 451 51.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.5e-126 456.4 466 50.9
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.3e-126 456.1 449 51.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.3e-126 455.7 484 51.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.7e-126 455.3 467 51.2
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 7.4e-126 454.9 449 50.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.7e-126 454.5 456 50.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-125 453.8 444 52.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.8e-125 453.0 479 49.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 8.2e-125 451.4 470 49.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-124 449.5 444 51.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.1e-124 449.5 448 50.4
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.3e-124 448.7 449 51.4
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 5.3e-124 448.7 449 51.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.3e-124 448.7 443 51.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-123 447.6 444 51.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.0e-123 446.8 449 51.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.4e-123 446.0 459 51.2
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.5e-123 445.7 480 49.0
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-123 444.9 444 51.4
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-123 444.9 444 51.4
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 6.5e-122 441.8 448 51.3
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-121 441.0 443 51.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.1e-121 441.0 472 49.2
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.9e-121 440.3 448 50.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-121 439.9 440 51.4
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.2e-121 439.5 443 51.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 5.5e-121 438.7 440 51.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 5.5e-121 438.7 462 48.5
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.1e-120 436.8 443 51.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.1e-120 436.8 470 48.5
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.1e-120 436.8 478 48.3
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-120 436.0 443 51.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.6e-120 436.0 472 49.6
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-120 435.3 443 51.2
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 6.1e-120 435.3 458 50.0
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.8e-119 431.4 448 50.2
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.3e-118 429.5 449 50.1
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-118 428.3 447 49.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.3e-117 427.6 461 47.1
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.3e-117 427.6 454 47.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.8e-117 425.6 458 48.7
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.8e-117 425.6 445 49.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.3e-117 425.2 449 50.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.3e-117 425.2 446 50.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.4e-116 424.1 456 51.5
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.3e-116 422.2 480 46.7
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.2e-115 421.0 463 47.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.5e-115 419.5 439 49.9
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.5e-115 419.5 439 49.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.5e-115 419.5 448 49.1
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 7.7e-115 418.3 457 47.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.7e-115 418.3 461 47.7
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.7e-115 418.3 469 47.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.0e-114 417.9 439 49.0
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.0e-114 417.9 448 49.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.0e-114 417.9 448 49.3
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.2e-114 416.8 439 49.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-114 416.4 448 48.9
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.5e-114 415.2 462 46.8
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.7e-112 409.1 466 47.6
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-111 407.9 468 46.6
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 6.7e-111 405.2 460 48.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.7e-110 401.4 460 46.3
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.7e-109 400.6 470 44.7
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.7e-107 391.7 466 44.6
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.2e-105 386.0 473 43.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-100 370.9 405 48.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 4.5e-99 365.9 460 45.2
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 6.5e-98 362.1 443 44.7
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 6.1e-96 355.5 382 45.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.0e-95 352.8 427 45.2
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.2e-91 341.3 447 42.5
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 6.6e-90 335.5 419 42.0
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-84 317.8 452 38.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-84 317.0 446 43.0
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-84 316.2 347 47.6
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-84 316.2 347 47.6
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.0e-84 315.5 453 38.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.5e-83 313.2 425 39.8
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.9e-83 312.4 452 38.1
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.6e-82 308.9 427 38.4
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-81 307.4 449 40.5
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-79 301.2 443 38.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 8.6e-66 255.4 201 63.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.2e-63 246.1 346 39.6
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.5e-54 218.0 337 40.7
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-51 207.2 197 54.3
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 3.5e-51 206.8 197 54.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 8.7e-50 202.2 204 52.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-48 197.2 163 61.3
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.0e-43 179.5 213 44.1
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.0e-38 164.5 163 51.5
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 6.2e-32 142.9 142 53.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.1e-25 122.1 323 31.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 9.3e-20 102.4 286 29.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.1e-19 101.3 168 39.3
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 8.7e-18 95.9 117 44.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.3e-15 86.7 82 51.2
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 7.7e-14 82.8 84 51.2


User provided reference genes

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