Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G059501 Glycine max HOM05D001234 ORTHO05D001048 2.6e-62 241.9 124 100.0
Phvul.008G224300 Phaseolus vulgaris HOM05D001234 ORTHO05D001048 5.9e-14 81.3 68 67.6
VMungo0647G2438 Vigna mungo HOM05D001234 ORTHO05D001048 6.5e-13 77.8 68 64.7
MSTRG.8327 Avicennia marina HOM05D001234 ORTHO05D001048 7.2e-12 74.3 53 66.0
SalBow6G5153 Salvia bowleyana HOM05D001234 ORTHO05D001048 1.6e-11 73.2 61 59.0
SGA_v2.0_scaffold76G25099 Striga asiatica HOM05D001234 ORTHO05D001048 2.1e-11 72.8 61 57.4
Lj6g0015093 Lotus japonicus HOM05D001234 ORTHO05D001048 3.6e-11 72.0 51 68.6
Sc11g0005070 Simmondsia chinensis HOM05D001234 ORTHO05D001048 3.6e-11 72.0 53 64.2
Glyma.18G027500 Glycine max HOM05D001234 ORTHO05D001048 4.7e-11 71.6 53 66.0
Glyma.11G229700 Glycine max HOM05D001234 ORTHO05D001048 6.1e-11 71.2 52 65.4
Ca_15124_v3 Cicer arietinum L. HOM05D001234 ORTHO05D001048 8.0e-11 70.9 63 58.7
Gohir.D10G248000 Gossypium hirsutum HOM05D001234 ORTHO05D001048 8.0e-11 70.9 52 61.5
Lalb_Chr11g0074961 Lupinus albus HOM05D001234 ORTHO05D001048 8.0e-11 70.9 52 65.4
VMungo1383G2559 Vigna mungo HOM05D001234 ORTHO05D001048 8.0e-11 70.9 52 65.4
Gorai.011G287800 Gossypium raimondii HOM05D001234 ORTHO05D001048 1.0e-10 70.5 52 61.5
Duzib128G1970 Durio zibethinus HOM05D001234 ORTHO05D001048 1.8e-10 69.7 59 55.9
Psat5g128480 Pisum sativum HOM05D001234 ORTHO05D001048 1.8e-10 69.7 52 63.5
TPR.G16236 Trifolium pratense HOM05D001234 ORTHO05D001048 1.8e-10 69.7 52 63.5
Duzib114G0089 Durio zibethinus HOM05D001234 ORTHO05D001048 2.3e-10 69.3 59 55.9
Medtr3g070490 Medicago truncatula HOM05D001234 ORTHO05D001048 2.3e-10 69.3 52 61.5
PGR044G1990 Punica granatum HOM05D001234 ORTHO05D001048 3.0e-10 68.9 57 59.6
Gohir.A10G236200 Gossypium hirsutum HOM05D001234 ORTHO05D001048 4.0e-10 68.6 52 61.5
THA.LOC104824312 Tarenaya hassleriana HOM05D001234 ORTHO05D001048 4.0e-10 68.6 70 51.4
CiPaw.01G298200 Carya illinoinensis HOM05D001234 ORTHO05D001048 5.2e-10 68.2 55 58.2
Potri.008G068200 Populus trichocarpa HOM05D001234 ORTHO05D001048 6.8e-10 67.8 61 55.7
A04p30100 Brassica napus HOM05D001234 ORTHO05D001048 8.8e-10 67.4 70 50.0
Manes.07G129600 Manihot esculenta HOM05D001234 ORTHO05D001048 8.8e-10 67.4 51 62.7
GSVIVG01032821001 Vitis vinifera HOM05D001234 ORTHO05D001048 8.8e-10 67.4 62 53.2
Sabra08G0050100 Salix brachista HOM05D001234 ORTHO05D001048 1.2e-09 67.0 61 54.1
TWI53G0515 Tripterygium wilfordii HOM05D001234 ORTHO05D001048 1.2e-09 67.0 90 46.7
unitig_747.g21411 Utricularia gibba HOM05D001234 ORTHO05D001048 1.2e-09 67.0 51 62.7
Atru.chr12.30 Acer truncatum HOM05D001234 ORTHO05D001048 1.5e-09 66.6 52 61.5
AUR62012246 Chenopodium quinoa HOM05D001234 ORTHO05D001048 1.5e-09 66.6 50 64.0
Phvul.001G242900 Phaseolus vulgaris HOM05D001234 ORTHO05D001048 1.5e-09 66.6 59 59.3
Ciclev10032998m.g Citrus clementina HOM05D001234 ORTHO05D001048 2.0e-09 66.2 62 51.6
Oeu025166.1 Olea europaea HOM05D001234 ORTHO05D001048 2.6e-09 65.9 46 65.2
Thecc.10G016800 Theobroma cacao HOM05D001234 ORTHO05D001048 2.6e-09 65.9 59 54.2
TAR369G0688 Trochodendron aralioides HOM05D001234 ORTHO05D001048 2.6e-09 65.9 72 51.4
BcaC02g07349 Brassica carinata HOM05D001234 ORTHO05D001048 4.4e-09 65.1 68 50.0
BcaC02g07391 Brassica carinata HOM05D001234 ORTHO05D001048 4.4e-09 65.1 68 50.0
C04p67760 Brassica napus HOM05D001234 ORTHO05D001048 4.4e-09 65.1 68 50.0
BolC4t28279H Brassica oleracea HOM05D001234 ORTHO05D001048 4.4e-09 65.1 68 50.0
AUR62022877 Chenopodium quinoa HOM05D001234 ORTHO05D001048 4.4e-09 65.1 71 52.1
QL08p063151 Quercus lobata HOM05D001234 ORTHO05D001048 4.4e-09 65.1 56 55.4
AUR62022878 Chenopodium quinoa HOM05D001234 ORTHO05D001048 5.7e-09 64.7 68 52.9
COL.COLO4_25719 Corchorus olitorius HOM05D001234 ORTHO05D001048 5.7e-09 64.7 61 52.5
THA.LOC104810087 Tarenaya hassleriana HOM05D001234 ORTHO05D001048 5.7e-09 64.7 48 60.4
Actinidia13936 Actinidia chinensis HOM05D001234 ORTHO05D001048 7.5e-09 64.3 51 58.8
BraA04t18497Z Brassica rapa HOM05D001234 ORTHO05D001048 7.5e-09 64.3 70 48.6
Cfa001321 Carpinus fangiana HOM05D001234 ORTHO05D001048 7.5e-09 64.3 66 53.0
EL10Ac2g04825 Beta vulgaris HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 51.5
BcaB02g09055 Brassica carinata HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 48.5
A05p06390 Brassica napus HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 48.5
C04p07390 Brassica napus HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 48.5
BolC4t22360H Brassica oleracea HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 48.5
BraA05t19607Z Brassica rapa HOM05D001234 ORTHO05D001048 1.3e-08 63.5 68 48.5
DCAR_028568 Daucus carota HOM05D001234 ORTHO05D001048 1.3e-08 63.5 46 65.2
Migut.F01385 Erythranthe guttata HOM05D001234 ORTHO05D001048 1.3e-08 63.5 53 52.8
Aqoxy4G02561 Aquilegia oxysepala HOM05D001234 ORTHO05D001048 1.7e-08 63.2 52 53.8
unitig_60.g25676 Utricularia gibba HOM05D001234 ORTHO05D001048 1.7e-08 63.2 64 51.6
AUR62012247 Chenopodium quinoa HOM05D001234 ORTHO05D001048 2.2e-08 62.8 68 52.9
Gohir.A10G236100 Gossypium hirsutum HOM05D001234 ORTHO05D001048 2.2e-08 62.8 59 49.2
Gorai.011G287700 Gossypium raimondii HOM05D001234 ORTHO05D001048 2.2e-08 62.8 59 49.2
C04p07360 Brassica napus HOM05D001234 ORTHO05D001048 2.8e-08 62.4 68 47.1
CSS0018933 Camellia sinensis var. sinensis HOM05D001234 ORTHO05D001048 2.8e-08 62.4 46 60.9
MD01G1152700 Malus domestica HOM05D001234 ORTHO05D001048 2.8e-08 62.4 53 56.6
EL10Ac2g04827 Beta vulgaris HOM05D001234 ORTHO05D001048 3.7e-08 62.0 68 50.0
BolC4t22358H Brassica oleracea HOM05D001234 ORTHO05D001048 3.7e-08 62.0 68 47.1
Hma1.2p1_0281F.1_g113040 Hydrangea macrophylla HOM05D001234 ORTHO05D001048 3.7e-08 62.0 46 63.0
Hma1.2p1_1978F.1_g309800 Hydrangea macrophylla HOM05D001234 ORTHO05D001048 3.7e-08 62.0 46 63.0
Carub.0004s2222 Capsella rubella HOM05D001234 ORTHO05D001048 4.9e-08 61.6 69 47.8
Sed0019507 Sechium edule HOM05D001234 ORTHO05D001048 4.9e-08 61.6 62 51.6
PGSC0003DMG400030357 Solanum tuberosum HOM05D001234 ORTHO05D001048 4.9e-08 61.6 64 50.0
Ah.16g103510 Amaranthus hybridus HOM05D001234 ORTHO05D001048 6.3e-08 61.2 50 58.0
CAN.G322.124 Capsicum annuum HOM05D001234 ORTHO05D001048 6.3e-08 61.2 52 55.8
Nitab4.5_0000517g0020 Nicotiana tabacum HOM05D001234 ORTHO05D001048 6.3e-08 61.2 52 55.8
Nitab4.5_0001171g0080 Nicotiana tabacum HOM05D001234 ORTHO05D001048 6.3e-08 61.2 52 55.8
Rhsim03G0143500 Rhododendron simsii HOM05D001234 ORTHO05D001048 6.3e-08 61.2 53 52.8
Solyc06g076960.2 Solanum lycopersicum HOM05D001234 ORTHO05D001048 6.3e-08 61.2 63 49.2
Solyc11g028200.1 Solanum lycopersicum HOM05D001234 ORTHO05D001048 6.3e-08 61.2 63 49.2
AT2G40080 Arabidopsis thaliana HOM05D001234 ORTHO05D001048 8.3e-08 60.8 67 47.8
CsaV3_5G010120 Cucumis sativus L. HOM05D001234 ORTHO05D001048 8.3e-08 60.8 52 55.8
Peaxi162Scf00825g00233 Petunia axillaris HOM05D001234 ORTHO05D001048 8.3e-08 60.8 52 55.8
Sp4g22370 Schrenkiella parvula HOM05D001234 ORTHO05D001048 8.3e-08 60.8 70 47.1
Sed0027235 Sechium edule HOM05D001234 ORTHO05D001048 8.3e-08 60.8 52 53.8
Sopen06g017630 Solanum pennellii HOM05D001234 ORTHO05D001048 8.3e-08 60.8 79 46.8
PGSC0003DMG400001221 Solanum tuberosum HOM05D001234 ORTHO05D001048 8.3e-08 60.8 52 55.8
Ah.16g103500 Amaranthus hybridus HOM05D001234 ORTHO05D001048 1.1e-07 60.5 50 58.0
Prupe.2G249800 Prunus persica HOM05D001234 ORTHO05D001048 1.1e-07 60.5 62 53.2
Solyc06g051660.1 Solanum lycopersicum HOM05D001234 ORTHO05D001048 1.1e-07 60.5 79 46.8
Sopen06g033360 Solanum pennellii HOM05D001234 ORTHO05D001048 1.1e-07 60.5 63 49.2
Aa31LG5G19530 Aethionema arabicum HOM05D001234 ORTHO05D001048 1.4e-07 60.1 96 41.7
Sopen06g017640 Solanum pennellii HOM05D001234 ORTHO05D001048 1.4e-07 60.1 62 51.6
TAR623G0816 Trochodendron aralioides HOM05D001234 ORTHO05D001048 1.4e-07 60.1 64 45.3
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 1.8e-07 59.7 46 58.7
AL301U10020 Arabidopsis lyrata HOM05D001234 ORTHO05D001048 1.8e-07 59.7 70 45.7
AL4G37700 Arabidopsis lyrata HOM05D001234 ORTHO05D001048 1.8e-07 59.7 70 45.7
BcaNung05463 Brassica carinata HOM05D001234 ORTHO05D001048 1.8e-07 59.7 70 45.7
CARHR135020 Cardamine hirsuta HOM05D001234 ORTHO05D001048 1.8e-07 59.7 70 45.7
ECA233G5144 Erigeron canadensis HOM05D001234 ORTHO05D001048 1.8e-07 59.7 46 58.7
Thhalv10017822m.g Eutrema salsugineum HOM05D001234 ORTHO05D001048 1.8e-07 59.7 70 45.7
Lsat_1_v5_gn_8_12161 Lactuca sativa HOM05D001234 ORTHO05D001048 1.8e-07 59.7 63 50.8
MBI05_g05305_MAGBIO Magnolia biondii HOM05D001234 ORTHO05D001048 1.8e-07 59.7 46 60.9
Peaxi162Scf00825g00024 Petunia axillaris HOM05D001234 ORTHO05D001048 1.8e-07 59.7 52 53.8
vmacro01690 Vaccinium macrocarpon HOM05D000101 ORTHO05D003282 1.8e-07 59.7 52 57.7
BcaB01g03591 Brassica carinata HOM05D001234 ORTHO05D001048 2.4e-07 59.3 70 45.7
BcaC01g05439 Brassica carinata HOM05D001234 ORTHO05D001048 2.4e-07 59.3 70 45.7
A03p22520 Brassica napus HOM05D001234 ORTHO05D001048 2.4e-07 59.3 68 45.6
C03p26670 Brassica napus HOM05D001234 ORTHO05D001048 2.4e-07 59.3 68 45.6
BraA03t11479Z Brassica rapa HOM05D001234 ORTHO05D001048 2.4e-07 59.3 68 45.6
CAN.G394.128 Capsicum annuum HOM05D001234 ORTHO05D001048 2.4e-07 59.3 69 47.8
CAN.G545.5 Capsicum annuum HOM05D001234 ORTHO05D001048 2.4e-07 59.3 65 47.7
Lsat_1_v5_gn_8_70961 Lactuca sativa HOM05D000683 ORTHO05D000507 2.4e-07 59.3 83 38.6
Solyc06g051680.1 Solanum lycopersicum HOM05D001234 ORTHO05D001048 2.4e-07 59.3 62 50.0
PGSC0003DMG400039436 Solanum tuberosum HOM05D001234 ORTHO05D001048 2.4e-07 59.3 69 49.3
ATR0618G091 Amborella trichopoda HOM05D001234 ORTHO05D001048 3.1e-07 58.9 70 48.6
ClCG07G004150 Citrullus lanatus HOM05D001234 ORTHO05D001048 3.1e-07 58.9 58 51.7
Eucgr.J00214 Eucalyptus grandis HOM05D001234 ORTHO05D001048 3.1e-07 58.9 67 49.3
Gohir.A06G163700 Gossypium hirsutum HOM05D001234 ORTHO05D001048 3.1e-07 58.9 90 38.9
Nn2g13710 Nelumbo nucifera HOM05D001234 ORTHO05D001048 3.1e-07 58.9 51 51.0
QL01p038295 Quercus lobata HOM05D001234 ORTHO05D001048 4.1e-07 58.5 46 58.7
PGSC0003DMG400006620 Solanum tuberosum HOM05D001234 ORTHO05D001048 4.1e-07 58.5 52 53.8
CSS0005955 Camellia sinensis var. sinensis HOM05D001234 ORTHO05D001048 5.4e-07 58.2 45 60.0
CiPaw.13G077400 Carya illinoinensis HOM05D001234 ORTHO05D001048 5.4e-07 58.2 53 52.8
RcHm_v2.0_Chr1g0370131 Rosa chinensis HOM05D001234 ORTHO05D001048 5.4e-07 58.2 72 47.2
Cc01_g14200 Coffea canephora HOM05D001234 ORTHO05D001048 7.0e-07 57.8 45 57.8
Potri.001G251600 Populus trichocarpa HOM05D001234 ORTHO05D001048 7.0e-07 57.8 64 45.3
Sabra16G0153000 Salix brachista HOM05D001234 ORTHO05D001048 7.0e-07 57.8 64 45.3
Gohir.D06G169600 Gossypium hirsutum HOM05D001234 ORTHO05D001048 9.2e-07 57.4 90 37.8
Gorai.010G198100 Gossypium raimondii HOM05D001234 ORTHO05D001048 9.2e-07 57.4 90 37.8
Manes.10G013000 Manihot esculenta HOM05D001234 ORTHO05D001048 9.2e-07 57.4 53 54.7
Nitab4.5_0000517g0030 Nicotiana tabacum HOM05D001234 ORTHO05D001048 9.2e-07 57.4 53 50.9
Nitab4.5_0003931g0050 Nicotiana tabacum HOM05D001234 ORTHO05D001048 9.2e-07 57.4 53 54.7
Peaxi162Scf00825g00022 Petunia axillaris HOM05D001234 ORTHO05D001048 1.2e-06 57.0 52 51.9
Dinv28641 Davidia involucrata HOM05D001234 ORTHO05D001048 1.6e-06 56.6 65 46.2
Nn2g11503 Nelumbo nucifera HOM05D001234 ORTHO05D001048 1.6e-06 56.6 64 46.9
HanXRQChr09g0261711 Helianthus annuus HOM05D001234 ORTHO05D001048 2.0e-06 56.2 59 49.2
HanXRQChr12g0370481 Helianthus annuus HOM05D001234 ORTHO05D001048 2.0e-06 56.2 47 55.3
Nitab4.5_0001806g0040 Nicotiana tabacum HOM05D001234 ORTHO05D001048 2.0e-06 56.2 53 52.8
PSO339G0635 Papaver somniferum HOM05D001234 ORTHO05D001048 2.0e-06 56.2 65 41.5
PSO408G0003 Papaver somniferum HOM05D001234 ORTHO05D001048 2.0e-06 56.2 53 45.3
Peaxi162Scf00540g00424 Petunia axillaris HOM05D001234 ORTHO05D001048 2.0e-06 56.2 62 46.8
HanXRQChr15g0479911 Helianthus annuus HOM05D001234 ORTHO05D001048 2.7e-06 55.8 47 55.3
MD11G1074300 Malus domestica HOM05D001234 ORTHO05D001048 2.7e-06 55.8 46 56.5
BcaC01g05438 Brassica carinata HOM05D001234 ORTHO05D001048 3.5e-06 55.5 97 38.1
BolC3t15052H Brassica oleracea HOM05D001234 ORTHO05D001048 3.5e-06 55.5 97 38.1
Eucgr.J00211 Eucalyptus grandis HOM05D001234 ORTHO05D001048 3.5e-06 55.5 59 47.5
VMungo0647G0082 Vigna mungo HOM05D001234 ORTHO05D001048 3.5e-06 55.5 52 51.9
Eucgr.J01911 Eucalyptus grandis HOM05D001234 ORTHO05D001048 4.5e-06 55.1 44 61.4
Nitab4.5_0000517g0040 Nicotiana tabacum HOM05D001234 ORTHO05D001048 4.5e-06 55.1 62 48.4
Nitab4.5_0001171g0090 Nicotiana tabacum HOM05D001234 ORTHO05D001048 5.9e-06 54.7 64 46.9
Ciclev10029554m.g Citrus clementina HOM05D001234 ORTHO05D001048 7.7e-06 54.3 59 47.5
SEGI_17460 Sequoiadendron giganteum HOM05D001234 ORTHO05D001048 7.7e-06 54.3 46 45.7


User provided reference genes

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