Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1472.6 702 100.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1336.2 703 90.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1258.0 676 89.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 0.0e+00 1127.5 673 80.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-292 1009.2 661 73.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 5.8e-292 1007.3 661 73.5
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 6.9e-285 983.8 674 71.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.0e-283 979.9 666 70.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.1e-282 976.5 664 71.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.4e-282 976.1 663 69.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.8e-280 969.1 666 69.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.9e-279 965.7 665 69.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 9.6e-279 963.4 672 68.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.6e-278 962.6 665 68.7
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.1e-261 904.8 676 65.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.2e-259 899.0 669 63.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.8e-259 898.3 667 63.4
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.6e-257 892.9 667 63.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-256 889.8 666 64.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.4e-256 889.8 672 64.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.6e-255 885.6 684 63.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.4e-253 879.0 699 62.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 9.1e-253 877.1 671 62.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.7e-252 874.0 666 64.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 6.5e-251 870.9 671 63.3
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.5e-250 869.8 667 63.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.2e-250 867.5 677 64.1
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.6e-249 866.3 667 62.5
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.7e-249 865.5 670 62.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-246 856.7 673 61.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-246 856.3 683 61.6
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.1e-245 852.0 672 61.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.1e-245 852.0 671 62.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.5e-244 848.6 679 60.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.8e-243 845.1 672 60.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-242 842.4 677 63.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.5e-242 842.4 670 60.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.6e-241 839.7 679 60.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.6e-241 838.6 668 63.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.6e-241 838.6 693 60.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-240 836.3 710 58.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.3e-240 835.9 667 61.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.0e-239 832.8 672 60.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.6e-239 832.4 667 61.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.4e-239 831.6 665 61.8
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.4e-239 831.6 722 56.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 9.8e-239 830.5 673 60.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.7e-238 829.7 648 61.9
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.4e-237 826.6 715 57.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.1e-237 825.1 700 58.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.4e-237 824.7 715 58.3
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 5.4e-237 824.7 707 59.3
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 9.1e-237 823.9 676 59.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.1e-237 823.9 687 58.7
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.9e-235 818.9 694 59.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.0e-235 818.1 682 58.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 8.5e-235 817.4 673 59.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.5e-234 815.8 673 59.3
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.5e-234 814.7 665 59.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 9.5e-234 813.9 673 59.0
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.8e-233 812.4 668 61.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 6.1e-233 811.2 679 57.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 8.0e-233 810.8 682 59.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-232 809.3 723 56.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.0e-232 808.9 685 57.1
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.4e-231 805.1 675 59.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.5e-231 804.3 672 59.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-230 803.1 676 58.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.8e-229 799.7 676 57.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 7.0e-229 797.7 684 57.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.6e-228 796.6 685 56.4
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 7.8e-228 794.3 613 63.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.3e-227 793.5 674 57.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.3e-227 792.7 674 58.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.5e-226 790.0 674 56.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.5e-226 789.3 678 58.1
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-224 783.9 661 57.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.8e-224 783.1 680 55.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.9e-224 780.8 689 56.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-223 780.0 691 54.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.9e-222 775.0 688 56.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-220 769.6 674 57.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.7e-217 758.4 667 56.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 4.7e-217 758.4 601 62.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-216 756.5 843 48.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.3e-216 756.1 669 56.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.0e-215 753.1 678 55.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.4e-213 746.9 669 54.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.6e-212 741.9 623 58.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-211 740.7 614 58.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-211 740.3 669 53.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-211 739.6 667 53.1
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.6e-211 738.0 669 53.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.5e-210 736.9 663 53.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.3e-210 735.7 668 53.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-208 730.3 666 53.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.8e-207 724.9 664 53.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.3e-206 723.8 666 53.0
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-206 722.6 671 52.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.9e-206 721.8 669 52.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 8.3e-206 721.1 667 52.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 8.3e-206 721.1 667 52.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.4e-205 720.3 667 53.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.9e-205 719.9 667 53.1
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.9e-205 719.9 670 51.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.4e-205 719.5 590 61.0
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.1e-205 718.0 670 51.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-204 716.1 654 52.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.6e-202 708.4 671 51.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.3e-202 708.0 670 51.5
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-201 706.4 682 53.2
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.7e-201 705.3 675 50.8
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.7e-201 705.3 680 52.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.2e-199 700.7 730 49.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-198 697.2 667 54.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.7e-198 696.8 675 50.4
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.2e-198 696.4 690 50.0
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-196 690.6 674 52.7
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 5.1e-195 685.3 395 84.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 4.3e-194 682.2 670 52.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.7e-193 678.7 672 51.3
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.0e-191 673.3 691 51.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-189 667.5 683 50.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 6.6e-187 658.3 535 61.9
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-185 653.7 646 50.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-183 647.5 565 55.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 6.0e-172 608.6 557 55.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-171 606.7 687 46.0
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.7e-169 599.4 677 48.2
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.1e-168 597.8 672 46.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.1e-168 596.3 664 48.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.7e-166 590.5 530 55.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.3e-142 511.1 544 46.9
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-129 467.6 328 64.9
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 4.1e-128 463.0 428 51.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.5e-117 427.9 383 55.9
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-106 391.7 297 60.9
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.5e-101 374.0 401 45.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-98 364.8 403 46.4
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.7e-94 351.3 460 41.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-93 348.2 231 72.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.1e-84 317.8 314 48.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.1e-83 315.5 563 34.3
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.9e-81 306.6 166 86.7
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 6.4e-81 306.2 577 35.2
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.4e-80 305.1 541 35.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.1e-68 264.6 325 44.3
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 8.4e-57 226.1 154 64.9
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.5e-50 203.8 137 68.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.0e-49 202.6 212 49.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 7.9e-47 193.0 243 43.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-46 192.2 121 71.1
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-46 191.4 233 44.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 9.0e-43 179.5 117 68.4
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.8e-38 165.2 180 46.1
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.1e-38 163.7 185 45.9
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-36 158.7 134 58.2
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-36 157.5 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-36 157.5 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-36 157.5 99 71.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.3e-36 156.8 379 29.6
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-30 138.3 146 47.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.4e-27 128.3 253 32.0
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.1e-27 127.5 274 33.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.1e-24 119.4 253 29.6
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.1e-21 109.4 201 38.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-21 107.8 84 66.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.7e-20 105.5 231 32.0
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.2e-16 91.3 59 67.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-14 84.7 131 35.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-11 76.3 48 64.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-11 76.3 48 64.6
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.1e-11 76.3 46 71.7


User provided reference genes

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