Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1432.9 679 100.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1263.8 676 89.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1259.6 677 88.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 0.0e+00 1171.8 674 81.9
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.4e-295 1018.5 662 73.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.5e-292 1009.2 662 73.0
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.5e-292 1009.2 667 72.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 9.6e-292 1006.5 677 71.6
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.8e-291 1005.0 668 71.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 9.9e-289 996.5 667 70.9
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.4e-288 993.8 667 70.5
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 8.4e-288 993.4 666 70.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.4e-287 992.6 675 69.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.8e-285 985.7 667 70.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.7e-267 926.0 673 64.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.8e-267 925.2 677 65.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-265 917.5 672 65.5
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.7e-265 917.1 670 64.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 6.5e-264 914.1 672 63.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.1e-262 909.1 687 63.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.7e-259 898.3 699 63.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.0e-258 894.0 678 65.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.5e-257 892.9 671 64.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 7.7e-257 890.6 671 62.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.2e-255 885.2 670 63.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.5e-255 884.4 671 63.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.5e-255 884.4 670 63.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.0e-254 880.6 672 62.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.3e-251 873.2 671 62.9
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.3e-250 867.8 673 64.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 9.1e-250 867.1 672 62.6
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-249 865.1 678 64.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.7e-248 862.8 669 61.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-248 862.8 681 60.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.2e-248 862.4 671 61.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.6e-246 855.1 683 60.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.1e-246 854.4 682 60.6
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-245 853.2 679 60.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.2e-245 851.3 668 62.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.2e-245 851.3 678 60.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 5.2e-245 851.3 716 59.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-244 850.1 668 62.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.4e-244 848.2 676 60.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.4e-244 848.2 668 61.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.8e-243 845.5 701 59.9
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.7e-243 845.1 650 62.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.3e-243 844.0 712 59.6
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.4e-242 842.4 673 62.6
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.1e-242 842.0 674 60.8
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.1e-242 841.6 677 60.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.1e-242 840.5 685 59.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-240 837.0 692 59.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.2e-240 835.9 725 56.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.8e-240 835.1 709 57.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 5.0e-240 834.7 684 57.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-239 832.8 716 58.7
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.9e-239 832.8 667 60.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 5.5e-239 831.2 675 59.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.1e-238 827.8 696 59.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 8.0e-238 827.4 708 58.9
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.0e-237 827.0 678 59.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.0e-237 825.1 678 59.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 6.8e-237 824.3 687 58.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.6e-236 822.4 684 56.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.2e-235 819.3 675 58.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.1e-234 817.0 682 57.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.4e-234 815.8 675 59.1
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.1e-234 815.5 679 59.2
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 7.7e-233 810.8 688 56.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.5e-231 806.6 616 63.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.3e-231 805.4 678 56.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.5e-231 804.7 675 57.9
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 7.2e-231 804.3 676 58.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.1e-230 801.2 674 58.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.4e-229 800.0 674 58.3
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.0e-229 798.9 682 57.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.5e-228 796.6 676 56.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.7e-228 794.7 669 57.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.5e-228 794.3 844 49.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 9.8e-228 793.9 679 57.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.8e-227 792.3 674 57.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.5e-225 785.0 682 56.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.9e-225 784.6 679 57.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.2e-222 776.9 671 56.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.8e-221 773.1 591 63.1
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.2e-221 771.5 671 57.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.8e-220 768.1 629 59.9
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.0e-218 761.1 613 59.9
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.2e-214 750.4 677 55.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.8e-214 749.2 665 53.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.4e-212 742.3 592 61.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.4e-211 738.0 398 89.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 9.2e-210 734.2 675 52.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.6e-209 733.4 675 52.7
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.5e-209 732.3 676 52.4
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.8e-209 731.1 672 52.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-208 729.6 675 51.6
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-208 729.2 685 54.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.0e-208 729.2 676 51.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.6e-208 728.0 675 52.1
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.9e-207 726.5 681 52.6
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.5e-207 726.1 671 51.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.3e-207 725.7 673 52.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.3e-207 725.3 674 52.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.1e-205 720.7 672 51.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 5.2e-205 718.4 670 51.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.9e-205 717.6 674 51.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-204 717.2 672 51.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-204 717.2 672 51.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.5e-204 716.8 675 51.6
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 5.8e-204 714.9 694 50.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.5e-204 714.5 680 51.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 7.5e-204 714.5 673 51.7
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.9e-204 714.1 672 51.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.9e-203 712.6 675 51.6
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.7e-203 712.2 676 54.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.5e-201 705.7 675 50.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 6.6e-200 701.4 679 53.3
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-199 700.3 666 53.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 9.5e-199 697.6 733 48.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.1e-197 692.6 667 53.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.6e-196 689.5 674 51.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-193 680.6 688 50.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.0e-192 676.0 535 62.4
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.7e-185 652.9 646 50.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-184 649.4 567 55.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 6.2e-182 641.7 557 56.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.7e-174 615.9 676 49.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.1e-174 614.8 680 46.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.8e-173 613.6 679 47.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.3e-171 607.4 534 56.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 7.1e-170 601.7 668 48.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.4e-146 524.2 546 46.5
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-130 469.9 328 64.9
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 5.7e-127 459.1 428 50.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.2e-119 434.9 383 56.9
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.3e-107 394.0 295 61.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.9e-102 376.3 400 45.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 7.8e-100 369.0 405 46.9
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-98 364.4 231 74.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.5e-98 364.0 464 41.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.8e-87 326.2 555 35.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 5.4e-85 319.7 547 35.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.2e-84 318.5 578 34.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.1e-84 317.8 311 48.9
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.3e-82 310.1 155 91.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.3e-70 271.9 330 44.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.5e-55 221.9 150 66.0
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-52 211.8 139 69.1
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.7e-50 203.4 250 43.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-49 202.2 212 50.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-45 189.1 121 70.2
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-43 182.6 225 44.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.0e-43 182.6 117 68.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-39 169.1 134 62.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 2.0e-39 168.3 179 45.8
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.6e-39 167.9 190 45.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.0e-38 166.0 383 29.5
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-35 154.5 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-35 154.5 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-35 154.5 99 71.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-34 151.8 154 50.0
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 8.5e-30 136.3 254 32.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.2e-29 134.0 291 32.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.7e-28 130.6 257 29.6
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-24 119.4 233 31.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.3e-22 112.5 201 37.3
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-20 105.1 84 65.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.8e-19 99.8 132 37.9
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 9.1e-16 89.7 59 64.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.6 48 60.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.6 48 60.4
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.2e-10 72.8 46 71.7


User provided reference genes

Program Settings