Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.8e-54 215.7 108 100.0
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.5e-53 212.6 108 97.2
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.3e-53 211.1 108 98.1
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.6e-52 209.1 108 94.4
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 5.8e-50 200.7 108 92.6
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 5.8e-50 200.7 108 92.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.3e-49 199.5 102 96.1
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.7e-49 199.1 102 96.1
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-49 199.1 108 91.7
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-49 199.1 108 91.7
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 7.1e-48 193.7 106 88.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.2e-47 193.0 106 86.8
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 87.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 87.7
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 88.7
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.1e-47 192.2 106 87.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 102 92.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 2.7e-47 191.8 106 87.7
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 86.8
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 6.0e-47 190.7 102 88.2
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.8e-46 189.1 104 88.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.3e-46 188.7 106 87.7
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.3e-46 188.7 107 87.9
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 87.9
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.9e-46 188.0 100 94.0
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 5.1e-46 187.6 107 87.9
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.7e-46 186.8 100 92.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.1e-45 186.4 104 89.4
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.5e-45 186.0 100 92.0
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.9e-45 185.7 105 84.8
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.5e-45 185.3 106 84.9
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.5e-45 185.3 106 84.9
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 3.3e-45 184.9 102 87.3
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 3.3e-45 184.9 102 87.3
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 4.3e-45 184.5 106 85.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 4.3e-45 184.5 104 86.5
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 4.3e-45 184.5 108 84.3
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.3e-45 184.5 104 87.5
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 5.6e-45 184.1 100 89.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 7.4e-45 183.7 102 86.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 7.4e-45 183.7 102 86.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 9.6e-45 183.3 106 85.8
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.3e-44 183.0 100 88.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 86.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.6e-44 182.6 102 86.3
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 84.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.1e-44 182.2 102 89.2
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.1e-44 182.2 100 88.0
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.9
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.7e-44 181.4 100 88.0
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 100 87.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.7e-44 181.4 104 86.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.8e-44 181.0 102 86.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 4.8e-44 181.0 100 88.0
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 86.3
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 86.3
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 86.3
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 86.3
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.2e-44 180.6 107 80.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 86.3
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.2e-44 180.3 102 82.4
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 80.4
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 86.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.8e-43 179.1 102 81.4
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.8e-43 179.1 100 86.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 83.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 4.0e-43 177.9 106 81.1
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.0e-43 177.9 107 79.4
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 6.9e-43 177.2 104 84.6
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 9.0e-43 176.8 100 86.0
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.2e-42 176.4 106 82.1
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.0e-42 175.6 106 82.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.6e-42 175.3 105 82.9
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 80.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 3.4e-42 174.9 107 78.5
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 4.5e-42 174.5 98 87.8
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.5e-42 174.5 98 84.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 5.8e-42 174.1 106 81.1
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 5.8e-42 174.1 106 81.1
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.6e-42 173.7 107 77.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 7.6e-42 173.7 107 76.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 7.6e-42 173.7 99 84.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.0e-41 173.3 106 79.2
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 77.6
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 77.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.7e-41 172.6 100 82.0
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 79.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 76.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 81.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-41 171.8 99 84.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 6.5e-41 170.6 99 86.9
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 8.4e-41 170.2 95 85.3
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 80.6
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.4e-40 169.5 107 74.8
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 75.7
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 3.2e-40 168.3 104 80.8
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 4.2e-40 167.9 106 78.3
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 4.2e-40 167.9 98 80.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 9.3e-40 166.8 98 79.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 2.1e-39 165.6 99 79.8
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.1e-39 165.6 95 88.4
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 3.5e-39 164.9 106 75.5
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 6.0e-39 164.1 104 76.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 6.0e-39 164.1 106 76.4
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 7.9e-39 163.7 105 76.2
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.0e-38 163.3 106 76.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 5.1e-38 161.0 101 77.2
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.7e-38 160.6 106 73.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 5.7e-37 157.5 106 72.6
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.6e-36 156.0 100 78.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.3e-36 154.1 106 71.7
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.1e-35 151.4 98 74.5
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.6e-34 148.7 106 66.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 3.4e-34 148.3 106 65.1
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 4.5e-34 147.9 102 67.6
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 72.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 7.6e-34 147.1 102 67.6
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 7.6e-34 147.1 102 67.6
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 64.2
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.7e-33 146.0 106 64.2
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 2.2e-33 145.6 102 66.7
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 2.2e-33 145.6 102 66.7
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 2.2e-33 145.6 102 66.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 3.8e-33 144.8 107 61.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.8e-33 144.8 86 82.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 5.0e-33 144.4 102 65.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.1e-32 143.3 101 66.3
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.9e-32 142.5 102 65.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.9e-32 142.5 101 67.3
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.9e-32 142.5 99 69.7
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.5e-32 142.1 102 64.7
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 5.5e-32 141.0 103 66.0
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 5.5e-32 141.0 103 66.0
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 5.5e-32 141.0 103 66.0
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 5.5e-32 141.0 103 66.0
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.6e-31 139.4 102 64.7
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-30 135.2 106 67.0
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 7.4e-29 130.6 66 92.4
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 9.7e-29 130.2 82 82.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.7e-28 129.4 102 60.8
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 3.4e-26 121.7 81 70.4
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.0e-25 120.2 65 87.7
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.1e-24 116.7 75 80.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 5.5e-24 114.4 96 60.4
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 9.4e-24 113.6 89 62.9
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-23 113.2 96 60.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.6e-23 112.8 97 61.9
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.1e-23 110.9 90 62.2
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.3e-22 109.0 86 61.6
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.6e-21 105.5 87 59.8
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 6.3e-20 100.9 56 82.1
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.5e-18 94.7 79 64.6
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 7.7e-18 94.0 54 85.2
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.3e-17 93.2 89 53.9
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.1e-16 90.1 56 76.8
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.2e-16 88.6 57 80.7
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.7e-15 85.5 50 82.0
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.5e-13 79.7 102 47.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.8e-12 75.5 89 46.1
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.3e-09 66.6 43 74.4
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 8.5e-09 63.9 84 42.9


User provided reference genes

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