Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 1.1e-150 536.6 270 100.0
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.9e-129 466.1 253 93.7
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 5.8e-123 444.5 252 88.5
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 3.6e-117 425.2 255 85.9
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 4.3e-102 375.2 254 76.8
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 5.8e-99 364.8 249 76.3
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 7.6e-99 364.4 257 73.2
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 2.9e-98 362.5 265 72.1
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 2.5e-97 359.4 256 73.0
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 5.5e-97 358.2 251 75.3
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 7.1e-97 357.8 249 72.7
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 1.2e-96 357.1 265 70.9
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 9.0e-84 314.3 254 65.7
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.2e-83 313.9 257 65.8
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.3e-82 310.5 260 64.2
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.1e-81 307.4 247 66.4
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 1.9e-81 306.6 254 65.0
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 2.5e-81 306.2 254 64.6
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.5e-81 306.2 254 64.6
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.6e-80 303.5 254 63.8
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.1e-80 303.1 254 63.0
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 2.7e-80 302.8 249 64.7
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 3.6e-80 302.4 257 61.1
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.1e-80 301.6 254 62.6
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 6.1e-80 301.6 262 62.2
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 7.9e-80 301.2 259 65.3
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 7.9e-80 301.2 250 64.4
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 7.9e-80 301.2 254 61.8
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 3.0e-79 299.3 254 61.8
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 5.1e-79 298.5 259 62.2
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 6.7e-79 298.1 262 63.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 6.7e-79 298.1 254 60.6
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 6.7e-79 298.1 255 63.5
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 8.8e-79 297.7 277 59.6
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 8.8e-79 297.7 250 64.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 2.5e-78 296.2 256 60.9
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 4.3e-78 295.4 253 63.6
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 5.7e-78 295.0 254 62.6
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 7.4e-78 294.7 255 62.7
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.7e-77 293.5 253 62.5
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.8e-77 292.0 253 62.1
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 4.8e-77 292.0 256 60.9
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 6.3e-77 291.6 252 61.1
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 1.1e-76 290.8 258 60.5
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 1.1e-76 290.8 257 59.9
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.4e-76 290.4 253 61.3
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.4e-76 290.4 259 61.0
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 2.4e-76 289.7 251 60.6
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 3.1e-76 289.3 252 60.7
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 3.1e-76 289.3 258 62.0
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 3.1e-76 289.3 250 58.8
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.1e-76 288.9 250 60.4
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 6.9e-76 288.1 253 63.6
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 9.1e-76 287.7 258 60.1
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.6e-75 286.2 254 61.4
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 4.5e-75 285.4 250 58.4
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 1.7e-74 283.5 260 60.0
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.2e-74 283.1 250 58.0
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 3.8e-74 282.3 250 58.4
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 6.5e-74 281.6 254 60.2
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 8.5e-74 281.2 262 60.7
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.1e-73 280.8 250 58.8
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.9e-73 280.0 249 61.0
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 4.2e-73 278.9 255 60.8
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 5.5e-73 278.5 266 58.3
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.2e-72 277.3 252 57.9
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.7e-72 276.2 258 60.5
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.7e-72 275.4 248 59.7
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 6.1e-72 275.0 265 57.7
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 3.3e-70 269.2 254 57.9
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 3.3e-70 269.2 284 54.9
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 5.7e-70 268.5 275 52.7
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 7.4e-70 268.1 252 57.1
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.3e-69 267.3 257 56.4
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.7e-69 266.9 275 53.5
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 2.8e-69 266.2 248 57.7
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 3.7e-69 265.8 259 56.8
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 6.3e-69 265.0 257 57.2
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 1.1e-68 264.2 255 57.3
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 4.1e-68 262.3 256 59.0
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.1e-68 262.3 259 57.1
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 7.0e-68 261.5 253 56.5
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 2.6e-67 259.6 258 54.3
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.5e-67 258.8 205 63.9
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 1.9e-65 253.4 211 65.9
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.6e-64 250.4 251 52.6
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 2.3e-63 246.5 252 56.0
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 7.4e-62 241.5 257 51.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.4e-60 237.3 297 46.1
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.2e-59 234.2 258 48.4
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 7.7e-59 231.5 249 50.6
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.9e-58 229.6 199 64.3
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 1.6e-56 223.8 250 51.2
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.3e-53 214.2 253 50.6
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 9.1e-52 208.0 256 49.6
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.8e-47 193.7 247 44.5
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 1.7e-42 177.2 155 62.6
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.5e-41 174.1 159 56.6
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.2e-38 164.5 239 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.1e-33 147.9 253 39.9
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.5e-33 147.5 171 52.6
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 8.9e-31 138.3 273 36.6
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.7e-29 134.0 141 56.0
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 3.4e-22 109.8 127 52.8
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 6.8e-15 85.5 92 46.7
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 9.9e-14 81.6 63 61.9
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 4.7e-08 62.8 122 36.9
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 4.4e-06 56.2 45 53.3


User provided reference genes

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