Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.1e-123 445.7 222 100.0
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 7.4e-108 394.0 220 87.3
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.5e-105 384.8 222 83.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.3e-100 368.6 223 80.3
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.1e-84 317.0 227 70.5
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.4e-82 310.1 226 68.6
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.2e-80 302.8 227 67.4
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 6.5e-80 301.2 225 65.3
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.1e-79 300.4 227 66.5
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.0e-77 293.9 223 66.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-76 289.7 225 67.1
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.2e-75 286.2 246 63.8
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.8e-75 285.8 228 64.5
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 3.7e-75 285.4 225 66.2
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-74 283.9 225 66.2
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.6e-73 280.0 232 63.8
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.5e-73 278.9 237 61.2
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.7e-73 277.7 225 64.9
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 7.7e-73 277.7 232 60.8
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.0e-72 277.3 213 63.8
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.0e-72 277.3 232 62.5
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.7e-72 276.6 231 63.2
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 6.5e-72 274.6 232 62.1
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.1e-71 273.9 230 60.9
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.9e-71 273.1 229 57.6
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 4.2e-71 271.9 225 63.1
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.5e-71 271.6 229 57.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 7.2e-71 271.2 214 63.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 9.4e-71 270.8 233 59.2
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 4.7e-70 268.5 233 57.9
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 8.0e-70 267.7 232 61.2
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.4e-69 266.9 232 60.3
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.4e-69 266.9 233 57.5
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.4e-69 266.9 231 59.3
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.8e-69 266.5 215 60.9
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 2.3e-69 266.2 233 58.8
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.3e-69 266.2 218 61.5
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.3e-69 266.2 226 61.9
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.0e-69 265.8 215 62.3
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.0e-69 265.4 240 58.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 5.2e-69 265.0 214 59.8
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 8.8e-69 264.2 213 62.4
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 8.8e-69 264.2 236 60.2
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.5e-68 263.5 222 62.2
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 2.0e-68 263.1 231 60.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.0e-68 263.1 232 56.9
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.6e-68 262.7 217 60.8
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 3.4e-68 262.3 224 60.3
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 4.4e-68 261.9 229 59.4
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.4e-68 261.9 207 61.4
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 7.5e-68 261.2 216 60.6
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 9.8e-68 260.8 214 58.4
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 9.8e-68 260.8 225 60.0
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 2.2e-67 259.6 233 58.8
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.7e-67 258.8 216 60.2
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.1e-66 257.3 212 59.0
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.4e-66 256.9 215 59.5
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.8e-66 256.5 208 60.6
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 7.0e-66 254.6 232 58.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 9.1e-66 254.2 214 60.3
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.7e-65 252.7 207 58.9
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.5e-65 252.3 171 74.3
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.7e-65 251.1 222 58.6
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.3e-64 250.4 223 58.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.9e-64 249.2 232 56.9
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.0e-64 248.4 214 56.1
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.5e-63 246.9 214 58.9
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 7.2e-63 244.6 229 59.0
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.6e-62 243.4 224 58.0
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 2.1e-62 243.0 221 56.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 2.7e-62 242.7 216 57.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 6.1e-62 241.5 221 54.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.4e-61 240.4 223 57.4
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.8e-61 240.0 224 59.8
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.0e-61 239.2 199 58.8
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 6.8e-61 238.0 223 56.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.5e-60 236.9 219 57.1
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.4e-60 235.3 224 54.5
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.4e-60 235.3 216 56.0
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.4e-60 235.3 216 56.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 7.5e-60 234.6 212 58.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 9.8e-60 234.2 232 53.9
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.3e-59 233.8 229 52.0
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.3e-59 233.8 212 58.0
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.3e-59 233.8 215 55.3
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.8e-59 232.6 196 57.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 4.9e-59 231.9 203 57.6
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 4.9e-59 231.9 222 53.6
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.1e-58 230.7 213 54.9
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.4e-58 230.3 214 54.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 5.4e-58 228.4 221 55.7
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.0e-57 226.5 194 56.2
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.7e-56 223.4 229 52.0
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.1e-55 220.7 229 55.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 9.5e-55 217.6 239 51.0
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.8e-53 213.4 228 50.9
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.3e-53 213.0 259 44.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.2e-52 210.7 270 45.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.4e-52 208.8 216 54.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 2.9e-51 206.1 231 47.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 5.0e-48 195.3 205 54.1
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.9e-47 193.4 232 47.0
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 9.5e-47 191.0 229 48.5
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.6e-46 190.3 216 50.5
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.1e-46 189.9 229 47.2
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 6.2e-46 188.3 170 57.1
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 5.2e-45 185.3 256 42.6
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 6.8e-45 184.9 163 57.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.2e-44 184.1 191 52.9
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.7e-41 172.9 234 43.2
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 3.5e-41 172.6 206 44.7
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 3.9e-40 169.1 128 64.8
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 7.3e-39 164.9 225 39.1
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.2e-38 164.1 226 42.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 2.2e-35 153.3 244 38.9
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 3.2e-34 149.4 121 61.2
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 6.6e-32 141.7 156 44.2
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.8e-30 136.3 218 39.0
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 3.1e-29 132.9 132 50.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 3.1e-29 132.9 82 70.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 9.2e-26 121.3 105 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 2.1e-25 120.2 136 46.3
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.1e-25 120.2 211 35.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.9e-23 113.6 78 64.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.4e-21 107.5 156 37.8
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.1e-21 106.3 97 54.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 7.6e-20 101.7 146 37.7
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 6.4e-19 98.6 135 41.5
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.6e-17 94.0 103 47.6
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.9e-15 87.0 123 38.2
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.8e-14 82.4 134 44.0
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.1e-14 81.6 133 42.1
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.8e-13 80.5 94 45.7
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 4.0e-13 79.3 76 50.0
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 5.8e-12 75.5 104 45.2
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 4.9e-11 72.4 187 25.1
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.9e-10 70.5 111 41.4
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 9.3e-10 68.2 83 47.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.0e-08 64.7 41 70.7
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 3.0e-08 63.2 73 42.5


User provided reference genes

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