Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.9e-119 432.6 229 100.0
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 4.2e-114 414.8 229 96.5
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.0e-112 410.2 230 96.1
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 5.1e-112 407.9 230 95.2
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 2.5e-106 389.0 228 89.9
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 7.1e-106 387.5 234 88.5
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 230 90.0
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.6e-105 386.3 236 88.1
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 3.5e-105 385.2 230 88.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 7.9e-105 384.0 229 89.1
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 7.9e-105 384.0 223 91.5
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.0e-104 383.6 230 88.7
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-104 383.3 229 87.8
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.8e-104 382.9 230 87.8
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.8e-104 382.9 230 88.7
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.3e-104 382.5 229 87.3
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.3e-104 382.5 234 88.9
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 3.0e-104 382.1 231 88.7
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 3.0e-104 382.1 226 87.6
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 5.1e-104 381.3 226 88.9
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 8.7e-104 380.6 230 88.3
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.5e-103 379.8 230 87.0
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.5e-103 379.8 227 88.5
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 227 88.5
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.9e-103 379.4 229 86.9
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 2.5e-103 379.0 229 87.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 3.3e-103 378.6 229 87.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.3e-103 378.6 234 87.6
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.3e-103 378.6 227 89.0
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.3e-103 378.3 226 87.2
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 5.6e-103 377.9 231 87.0
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 5.6e-103 377.9 229 87.8
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 7.4e-103 377.5 230 86.5
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 7.4e-103 377.5 229 87.3
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.3e-102 376.7 221 88.7
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.3e-102 376.7 220 88.6
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.6e-102 376.3 225 87.6
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.6e-102 376.3 230 87.4
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 230 87.4
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 230 87.0
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.1e-102 375.9 230 87.4
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 229 87.3
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 2.8e-102 375.6 228 87.3
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.8e-102 375.6 229 86.0
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 3.7e-102 375.2 228 87.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 3.7e-102 375.2 229 87.3
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 4.8e-102 374.8 225 88.0
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 4.8e-102 374.8 227 87.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 6.2e-102 374.4 230 86.5
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.1e-101 373.6 226 86.3
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.4e-101 373.2 231 86.6
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 230 86.5
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.4e-101 373.2 230 86.5
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.8e-101 372.9 224 85.7
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 2.4e-101 372.5 234 83.8
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.4e-101 372.5 229 86.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.4e-101 372.5 229 86.5
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.4e-101 372.5 229 86.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 3.1e-101 372.1 232 85.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 4.0e-101 371.7 230 86.5
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 4.0e-101 371.7 230 86.5
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 4.0e-101 371.7 230 86.5
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 5.3e-101 371.3 230 86.1
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 5.3e-101 371.3 230 85.7
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 6.9e-101 370.9 230 86.1
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 6.9e-101 370.9 234 86.3
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 6.9e-101 370.9 235 83.8
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 9.0e-101 370.5 229 86.0
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 9.0e-101 370.5 229 86.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 9.0e-101 370.5 229 85.2
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.5e-100 369.8 230 85.7
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.0e-100 369.4 226 85.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.0e-100 369.4 231 85.7
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 227 88.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.6e-100 369.0 230 86.1
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.4e-100 368.6 230 86.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.5e-100 368.2 209 91.9
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 4.5e-100 368.2 207 91.8
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 4.5e-100 368.2 227 87.7
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.8e-100 367.9 230 85.7
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 7.6e-100 367.5 228 86.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 7.6e-100 367.5 236 82.6
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 7.6e-100 367.5 230 84.8
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.0e-99 367.1 228 85.1
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.3e-99 366.7 229 85.2
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.3e-99 366.7 227 85.9
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.3e-99 366.7 214 89.3
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.3e-99 366.7 208 92.3
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.2e-99 365.9 225 84.9
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 2.9e-99 365.5 230 85.2
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.8e-99 365.2 256 77.7
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.9e-98 362.8 233 82.8
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.9e-98 362.8 229 84.3
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 4.2e-98 361.7 207 92.3
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 5.5e-98 361.3 231 83.5
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.5e-98 361.3 205 90.2
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 9.3e-98 360.5 226 83.2
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 9.3e-98 360.5 233 83.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 9.3e-98 360.5 215 87.9
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.2e-97 360.1 224 85.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.2e-97 360.1 229 83.4
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.2e-97 360.1 231 81.0
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.6e-97 359.8 231 84.8
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.5e-97 358.6 230 84.3
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 7.9e-97 357.5 231 82.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.3e-96 356.7 211 86.3
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.8e-96 356.3 233 82.4
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 5.1e-96 354.8 229 82.1
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.1e-95 353.6 229 79.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.3e-94 350.1 227 80.6
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.1e-93 347.1 223 83.4
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.9e-91 339.0 299 65.2
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.3e-88 329.3 192 89.6
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.3e-88 329.3 210 80.5
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 5.1e-88 328.2 233 77.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.2e-83 312.8 222 75.2
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.8e-83 312.0 214 75.2
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 7.4e-79 297.7 192 84.4
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.7e-75 286.6 207 73.4
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 3.8e-75 285.4 179 86.0
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.2e-73 280.4 194 79.9
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.1e-71 273.9 166 87.3
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.1e-71 273.9 181 80.7
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 2.6e-71 272.7 158 90.5
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 2.6e-71 272.7 158 90.5
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.6e-71 272.7 158 89.9
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.3e-71 272.3 161 89.4
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.8e-70 269.2 156 90.4
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-69 265.0 186 75.3
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.0e-68 263.1 182 75.8
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 5.9e-68 261.5 163 85.9
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 7.7e-60 234.6 160 77.5
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.5e-55 220.3 124 91.9
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 7.0e-53 211.5 159 74.2
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.3e-43 179.9 110 88.2
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.3e-42 176.0 103 90.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.6e-41 173.7 106 87.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.9e-34 150.2 158 55.1
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 7.3e-34 148.3 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 7.8e-28 128.3 129 58.1
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 3.1e-24 116.3 78 82.1
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 5.2e-24 115.5 206 37.4
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.6e-20 102.4 56 87.5
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.1e-17 93.6 63 73.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.4e-15 85.9 66 68.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.3e-14 84.3 65 66.2
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 2.1e-09 67.0 47 72.3


User provided reference genes

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