Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.0e-114 416.8 215 100.0
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.0e-114 416.8 215 100.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 8.2e-112 407.1 213 97.2
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.3e-97 358.6 215 85.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.6e-91 339.7 216 81.9
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.9e-90 335.1 216 80.1
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.1e-89 333.6 210 81.4
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.6e-89 332.4 211 80.6
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.3e-87 324.7 210 79.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.2e-85 319.3 216 75.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.9e-85 318.9 216 75.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-85 318.9 216 75.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.8e-85 318.5 216 75.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.8e-85 318.5 216 74.5
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.5e-85 317.8 216 75.9
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 6.5e-85 317.8 216 75.0
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 6.5e-85 317.8 214 75.2
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.1e-84 317.0 216 74.1
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.5e-84 316.6 216 74.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 3.2e-84 315.5 214 73.8
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 3.2e-84 315.5 216 74.5
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 5.5e-84 314.7 216 74.5
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.4e-84 313.9 211 74.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-83 313.5 216 73.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.6e-83 313.2 216 74.5
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.6e-83 313.2 215 73.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.7e-83 311.6 216 74.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.7e-83 311.6 216 75.5
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.0e-82 310.5 216 72.7
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.4e-82 310.1 216 75.5
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.4e-82 310.1 216 74.1
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.8e-82 309.7 216 73.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 4.0e-82 308.5 214 73.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-81 306.6 210 74.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.4e-81 305.1 216 73.1
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.5e-81 304.3 216 72.7
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 7.5e-81 304.3 216 72.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.7e-81 303.9 216 72.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.3e-80 303.5 216 72.7
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.7e-80 303.1 216 72.7
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.2e-80 302.8 242 66.9
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.8e-80 302.4 216 72.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 4.8e-80 301.6 216 71.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.8e-79 299.7 216 71.3
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.8e-79 299.7 216 72.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 3.1e-79 298.9 216 69.9
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 5.3e-79 298.1 216 72.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-78 297.0 216 71.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.6e-78 296.6 214 70.1
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.0e-78 296.2 211 70.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.0e-78 296.2 216 71.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 4.5e-78 295.0 216 69.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 7.7e-78 294.3 216 70.8
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.9e-77 292.4 216 69.9
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 3.8e-77 292.0 216 70.8
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 6.5e-77 291.2 215 71.2
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.1e-76 290.4 216 71.3
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-76 290.4 201 72.1
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.1e-76 290.4 216 70.4
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.1e-76 290.4 216 70.4
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.5e-76 290.0 216 68.1
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.5e-76 289.3 216 69.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.5e-76 289.3 216 69.9
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 4.2e-76 288.5 216 69.9
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.6e-75 286.6 248 63.3
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.1e-75 284.6 201 72.1
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.0e-74 282.3 212 68.4
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.2e-73 280.4 216 67.6
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 9.8e-73 277.3 270 57.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.3e-72 276.9 184 75.0
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.7e-72 276.6 216 63.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 4.8e-72 275.0 210 66.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.1e-71 273.9 216 63.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.4e-71 273.5 216 63.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.8e-71 273.1 201 71.1
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.1e-71 272.3 216 62.5
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 4.1e-71 271.9 216 63.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.4e-71 271.6 216 62.5
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 5.4e-71 271.6 216 62.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 5.4e-71 271.6 210 67.1
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 9.1e-71 270.8 216 62.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.2e-70 270.4 216 61.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-70 270.0 216 62.5
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-70 270.0 216 62.0
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.6e-70 270.0 216 62.0
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 7.7e-70 267.7 216 62.5
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-69 266.9 216 62.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 3.8e-69 265.4 216 61.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.2e-67 260.4 174 75.9
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-66 256.9 205 62.9
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 4.0e-66 255.4 210 64.3
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.4e-65 252.3 177 71.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 4.4e-65 251.9 208 61.1
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 6.3e-64 248.1 212 61.8
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.1e-63 245.7 181 70.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.1e-59 231.5 210 57.1
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.2e-56 223.0 214 57.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.7e-54 216.1 216 55.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.5e-54 215.7 210 53.3
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.5e-52 207.6 211 54.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.6e-51 205.7 211 53.6
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 5.2e-50 201.8 214 51.4
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.0e-49 199.9 141 70.2
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.9e-47 193.4 210 50.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.6e-43 179.1 236 48.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 8.1e-43 177.9 209 50.7
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 8.6e-37 157.9 203 42.4
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.3e-36 155.6 115 68.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.6e-36 155.2 122 62.3
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.9e-24 115.5 102 52.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.9e-20 103.6 102 50.0
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.3e-16 90.9 74 63.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 7.4e-12 75.1 58 65.5
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 9.6e-12 74.7 75 48.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-10 71.2 129 38.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.8e-10 70.5 64 54.7
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.8e-10 70.5 201 22.9
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.1e-10 69.7 65 50.8
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 7.6e-09 65.1 70 50.0


User provided reference genes

Program Settings