Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 5.4e-215 750.7 387 100.0
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 1.2e-161 573.5 340 87.9
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.9e-120 435.6 331 72.5
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.7e-115 420.2 383 62.7
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 7.0e-114 414.8 408 60.3
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.1e-113 413.3 361 65.7
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 4.6e-113 412.1 390 59.0
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 2.8e-110 402.9 406 59.4
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 8.3e-107 391.3 355 63.4
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 6.4e-99 365.2 407 55.5
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 3.4e-84 316.2 391 52.4
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 7.6e-84 315.1 404 53.5
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 3.5e-81 306.2 404 52.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.0e-52 210.7 384 40.4
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.0e-48 198.4 375 40.8
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 8.8e-48 195.3 385 37.7
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 4.8e-46 189.5 401 37.9
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 1.6e-41 174.5 388 36.9
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 2.1e-41 174.1 365 38.6
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 3.6e-41 173.3 365 38.1
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 3.0e-40 170.2 365 38.1
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 1.7e-38 164.5 361 36.8
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 8.5e-35 152.1 398 35.4
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 2.5e-34 150.6 391 33.2
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 9.4e-34 148.7 401 33.9
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 2.3e-32 144.1 385 32.2
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 5.2e-32 142.9 372 33.1
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.0e-31 141.0 240 38.8
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 2.0e-31 141.0 403 35.0
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 3.4e-31 140.2 384 33.1
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 4.4e-31 139.8 254 38.2
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.4e-29 134.8 353 33.7
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 9.1e-29 132.1 266 36.8
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 1.6e-28 131.3 299 35.1
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.5e-28 130.2 241 36.9
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.3e-27 128.3 240 36.7
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.7e-27 127.9 369 32.2
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 2.9e-27 127.1 259 36.3
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 5.0e-27 126.3 404 30.0
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 6.5e-27 125.9 379 32.5
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.5e-27 125.6 359 32.0
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 2.5e-26 124.0 395 31.4
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 9.4e-26 122.1 174 45.4
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.1e-25 120.9 363 31.7
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 3.6e-25 120.2 294 35.0
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 4.7e-25 119.8 296 35.8
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 1.0e-24 118.6 383 31.3
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 8.8e-24 115.5 186 43.0
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 2.6e-23 114.0 321 33.6
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 5.7e-23 112.8 354 29.9
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.7e-22 111.3 235 39.6
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 8.3e-22 109.0 192 42.7
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 8.3e-22 109.0 267 35.2
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 4.1e-21 106.7 376 31.1
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 5.4e-21 106.3 303 36.0
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 7.0e-21 105.9 176 42.0
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 1.0e-19 102.1 373 29.0
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.3e-19 101.7 162 43.8
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 6.6e-19 99.4 278 35.6
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 8.6e-19 99.0 347 31.4
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.9e-18 97.8 176 42.0
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 1.9e-18 97.8 261 34.9
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 2.5e-18 97.4 176 42.6
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 1.2e-17 95.1 323 31.6
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 2.8e-17 94.0 322 33.2
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 1.0e-16 92.0 179 39.1
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.3e-16 90.9 379 26.4
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 2.3e-16 90.9 105 52.4
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 3.0e-16 90.5 380 28.7
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 4.0e-16 90.1 382 27.2
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.2e-15 88.6 241 34.0
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 7.5e-15 85.9 373 27.6
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.7e-14 84.7 85 50.6
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 4.9e-14 83.2 160 40.0
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 1.8e-13 81.3 162 37.7
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 4.1e-13 80.1 362 27.3
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 9.2e-13 79.0 220 34.5
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 1.2e-12 78.6 362 28.2
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 5.9e-12 76.3 151 35.1
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 3.9e-11 73.6 165 37.0
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.5e-10 71.6 94 48.9
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 8.0e-09 65.9 150 38.7
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.4e-08 65.1 191 32.5
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 1.8e-08 64.7 214 35.5
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 2.3e-08 64.3 201 33.3
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 6.8e-08 62.8 221 31.2
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 1.5e-07 61.6 176 33.0
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 2.0e-07 61.2 202 32.2
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 2.0e-07 61.2 229 29.7
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 2.6e-07 60.8 177 33.3
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 2.6e-07 60.8 174 33.9
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 2.6e-07 60.8 199 32.7
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 2.6e-07 60.8 115 44.3
C03p32340 Brassica napus HOM05D001841 ORTHO05D001767 3.4e-07 60.5 199 32.7
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 3.4e-07 60.5 186 32.3
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 7.5e-07 59.3 156 36.5
Aqoxy6G01410 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 9.8e-07 58.9 135 34.8
Eucgr.F00024 Eucalyptus grandis HOM05D001841 ORTHO05D001767 1.3e-06 58.5 191 30.4
HPP92_022826 Vanilla planifolia HOM05D002733 ORTHO05D010023 2.2e-06 57.8 184 31.0
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 2.9e-06 57.4 182 34.1
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 3.7e-06 57.0 182 34.1
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 3.7e-06 57.0 111 38.7
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 4.9e-06 56.6 210 31.9


User provided reference genes

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