Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 6.6e-266 920.2 491 100.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.8e-263 912.1 491 99.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.3e-255 885.2 491 96.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.8e-247 859.0 474 96.8
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.6e-240 834.7 490 89.8
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 8.1e-240 833.6 490 89.8
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.1e-239 831.6 492 90.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 6.8e-239 830.5 493 89.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.9e-237 825.1 493 88.4
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.0e-234 816.6 489 87.9
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 6.6e-234 813.9 489 88.3
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 5.8e-230 800.8 491 86.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 6.6e-226 787.3 489 86.5
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 4.3e-217 758.1 490 82.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.3e-217 758.1 490 82.7
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.1e-215 753.4 497 81.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 3.2e-212 741.9 494 81.4
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 9.3e-212 740.3 502 81.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.1e-210 734.6 498 79.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.1e-209 733.4 499 79.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 9.6e-209 730.3 493 79.7
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.3e-208 729.9 498 79.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.3e-208 729.9 489 80.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 6.2e-208 727.6 476 82.4
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.2e-208 727.6 493 80.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 6.9e-207 724.2 496 77.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.5e-206 723.0 498 79.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 7.6e-206 720.7 474 82.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.4e-204 716.5 489 79.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.9e-204 716.1 502 77.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.3e-204 713.8 489 79.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-203 713.4 494 78.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-203 713.4 516 75.2
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.1e-203 712.6 494 78.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.3e-202 709.9 477 80.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-202 709.9 489 79.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.7e-202 707.2 526 73.6
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 8.7e-202 707.2 494 79.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.5e-201 706.4 496 76.2
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.5e-201 706.4 488 78.1
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.6e-201 703.7 489 78.5
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 3.7e-200 701.8 491 77.2
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.7e-200 701.8 488 76.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.8e-199 699.5 496 77.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.9e-199 697.6 466 80.7
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-198 696.8 496 76.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-198 696.4 505 75.0
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.4e-196 689.9 514 76.1
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.9e-196 689.5 498 76.3
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 7.1e-196 687.6 497 75.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.5e-195 685.3 498 75.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 7.9e-195 684.1 497 76.7
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.1e-193 680.2 495 75.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.5e-193 679.9 491 73.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.6e-192 676.4 493 73.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 5.3e-191 671.4 497 74.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.5e-190 669.8 486 76.1
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.0e-190 669.5 497 74.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.0e-189 667.2 495 74.1
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.7e-189 666.4 493 71.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.2e-189 666.0 492 74.0
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.8e-189 665.2 505 73.1
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.1e-188 663.7 502 72.1
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.2e-188 661.8 497 73.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 4.6e-187 658.3 488 73.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.0e-186 655.6 455 78.2
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 6.7e-186 654.4 491 73.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 6.7e-186 654.4 497 72.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.3e-185 651.7 498 74.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 5.3e-183 644.8 508 69.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.5e-182 643.3 499 70.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 3.4e-182 642.1 441 77.3
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 7.7e-182 641.0 489 70.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.0e-181 640.6 500 70.4
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.3e-181 640.2 483 71.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 6.5e-181 637.9 500 70.4
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.9e-180 636.3 499 69.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 7.2e-180 634.4 500 69.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 9.4e-180 634.0 500 69.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-179 632.9 508 69.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.7e-179 632.5 484 71.9
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 4.7e-179 631.7 503 69.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.7e-179 631.7 498 70.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.3e-178 629.4 500 69.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.8e-176 622.5 497 68.4
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.8e-176 622.5 509 67.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.8e-176 622.5 518 68.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 9.1e-175 617.5 497 68.0
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.5e-174 615.5 499 67.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.8e-173 612.1 409 81.7
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.8e-173 612.1 494 67.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.4e-172 610.1 491 69.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.5e-172 609.4 496 67.7
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.2e-172 607.8 494 67.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 9.4e-172 607.4 489 67.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 8.0e-171 604.4 499 67.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.6e-169 599.4 442 76.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 9.7e-169 597.4 500 67.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-168 597.0 493 65.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 3.7e-168 595.5 497 64.4
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.5e-165 584.3 502 64.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.9e-164 583.2 498 65.5
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.5e-158 562.0 375 80.3
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-153 547.4 356 82.3
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.5e-153 547.0 533 61.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.5e-148 530.4 475 63.8
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.9e-146 521.2 474 61.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.6e-145 519.6 474 59.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.5e-140 501.1 486 58.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.9e-136 489.6 498 59.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 3.7e-136 489.2 485 60.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 6.8e-130 468.4 375 72.5
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.2e-126 457.6 443 60.5
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.9e-124 450.3 388 68.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.9e-124 450.3 404 61.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.7e-123 445.7 378 63.0
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 4.3e-116 422.5 482 56.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-106 391.3 379 61.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.1e-106 391.3 379 61.7
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 9.0e-98 361.7 202 90.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.6e-94 350.9 253 78.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 6.7e-93 345.5 424 50.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 7.4e-92 342.0 369 53.7
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.6e-86 324.3 324 54.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.8e-85 320.9 443 46.3
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-83 313.2 215 78.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.3e-79 298.5 220 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.0e-77 295.0 404 42.3
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.7e-60 236.1 202 66.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.1e-58 228.8 268 54.1
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.5e-57 226.5 405 37.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 7.2e-55 219.2 395 37.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-51 206.8 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.2e-49 201.8 339 37.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.8e-43 180.6 132 72.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 5.0e-40 169.9 286 44.1
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.2e-39 166.8 92 90.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.4e-36 157.1 86 89.5
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-35 155.2 93 73.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.6e-28 131.0 87 77.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.0e-24 119.0 144 53.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.5e-23 114.4 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.0e-21 109.0 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.1e-18 97.1 92 55.4
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 6.0e-17 93.2 66 75.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.7e-11 73.9 71 60.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.9e-11 73.6 62 58.1
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.9e-11 73.6 62 58.1
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.6e-09 67.0 62 53.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.3e-08 64.7 65 58.5
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 1.1e-07 62.4 93 36.6


User provided reference genes

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