Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G028650 Glycine max HOM05D003390 ORTHO05D004189 2.2e-55 218.8 114 100.0
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 6.4e-39 164.1 101 86.1
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 8.3e-39 163.7 101 85.1
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 8.3e-39 163.7 101 85.1
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 9.2e-38 160.2 99 85.9
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 2.1e-37 159.1 101 83.2
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.5e-37 158.3 100 84.0
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.5e-37 158.3 100 84.0
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 3.5e-37 158.3 100 84.0
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 4.6e-37 157.9 99 82.8
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 4.6e-37 157.9 101 83.2
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 7.8e-37 157.1 101 83.2
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 7.8e-37 157.1 101 83.2
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 7.8e-37 157.1 99 82.8
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 7.8e-37 157.1 101 83.2
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 1.3e-36 156.4 100 82.0
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 1.7e-36 156.0 101 82.2
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 2.3e-36 155.6 98 84.7
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 2.3e-36 155.6 99 82.8
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.0e-36 155.2 99 80.8
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 3.0e-36 155.2 99 80.8
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.9e-36 154.8 99 79.8
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 5.1e-36 154.5 99 80.8
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 6.6e-36 154.1 101 81.2
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 1.5e-35 152.9 99 80.8
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 1.5e-35 152.9 99 79.8
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 1.9e-35 152.5 99 81.8
LjContig00141g0021144 Lotus japonicus HOM05D003390 ORTHO05D004791 2.5e-35 152.1 99 80.8
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 2.5e-35 152.1 99 80.8
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 2.5e-35 152.1 99 80.8
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 2.5e-35 152.1 99 79.8
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 3.3e-35 151.8 99 78.8
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 3.3e-35 151.8 99 79.8
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 4.3e-35 151.4 99 78.8
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 4.3e-35 151.4 99 80.8
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 4.3e-35 151.4 99 80.8
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 5.6e-35 151.0 99 78.8
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 5.6e-35 151.0 99 79.8
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 7.3e-35 150.6 99 78.8
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 7.3e-35 150.6 99 79.8
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 9.5e-35 150.2 96 81.2
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 9.5e-35 150.2 99 79.8
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 1.2e-34 149.8 100 78.0
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 1.6e-34 149.4 99 79.8
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 2.1e-34 149.1 101 78.2
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 2.1e-34 149.1 101 78.2
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 2.8e-34 148.7 99 78.8
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 2.8e-34 148.7 99 77.8
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 3.6e-34 148.3 100 78.0
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 76.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 76.8
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 76.8
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 76.8
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 76.8
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 3.6e-34 148.3 99 78.8
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 4.7e-34 147.9 99 77.8
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 4.7e-34 147.9 101 77.2
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 4.7e-34 147.9 99 76.8
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 4.7e-34 147.9 99 77.8
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 4.7e-34 147.9 99 76.8
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 4.7e-34 147.9 99 76.8
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 6.2e-34 147.5 101 77.2
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 6.2e-34 147.5 99 77.8
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 6.2e-34 147.5 99 76.8
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 77.8
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 8.1e-34 147.1 101 77.2
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 8.1e-34 147.1 101 77.2
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 75.8
Cpa.g.sc50.94 Carica papaya HOM05D003390 ORTHO05D004189 8.1e-34 147.1 95 81.1
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 74.7
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 77.8
RcHm_v2.0_Chr2g0151651 Rosa chinensis HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 77.8
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 8.1e-34 147.1 99 76.8
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 1.1e-33 146.7 99 77.8
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.1e-33 146.7 95 81.1
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 1.1e-33 146.7 99 78.8
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.1e-33 146.7 101 77.2
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 1.4e-33 146.4 99 76.8
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 1.4e-33 146.4 99 76.8
Atru.chr6.2080 Acer truncatum HOM05D003390 ORTHO05D004189 1.8e-33 146.0 99 76.8
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 1.8e-33 146.0 101 77.2
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 2.3e-33 145.6 99 76.8
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 2.3e-33 145.6 99 76.8
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.3e-33 145.6 99 76.8
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 2.3e-33 145.6 99 76.8
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 2.3e-33 145.6 99 76.8
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 3.1e-33 145.2 99 76.8
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 3.1e-33 145.2 99 75.8
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 3.1e-33 145.2 100 76.0
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 4.0e-33 144.8 96 78.1
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 4.0e-33 144.8 99 75.8
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 4.0e-33 144.8 100 76.0
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 4.0e-33 144.8 99 77.8
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 4.0e-33 144.8 99 77.8
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 4.0e-33 144.8 99 75.8
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 73.7
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 5.2e-33 144.4 100 75.0
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 5.2e-33 144.4 99 75.8
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 5.2e-33 144.4 97 78.4
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 75.8
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 75.8
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 74.7
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 77.8
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 77.8
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 6.8e-33 144.1 99 77.8
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 6.8e-33 144.1 98 77.6
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 6.8e-33 144.1 100 75.0
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 8.9e-33 143.7 95 78.9
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 8.9e-33 143.7 99 75.8
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 1.2e-32 143.3 99 75.8
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 1.5e-32 142.9 99 75.8
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 1.5e-32 142.9 100 76.0
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 2.0e-32 142.5 101 75.2
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 2.0e-32 142.5 99 75.8
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 2.0e-32 142.5 99 77.8
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 2.0e-32 142.5 99 74.7
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 2.0e-32 142.5 100 74.0
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 2.6e-32 142.1 99 74.7
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 2.6e-32 142.1 100 74.0
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 3.4e-32 141.7 101 74.3
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 3.4e-32 141.7 101 74.3
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 3.4e-32 141.7 99 75.8
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 3.4e-32 141.7 99 74.7
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 4.4e-32 141.4 99 74.7
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 4.4e-32 141.4 99 74.7
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 4.4e-32 141.4 100 73.0
HPP92_008023 Vanilla planifolia HOM05D003390 ORTHO05D004189 4.4e-32 141.4 100 72.0
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 7.6e-32 140.6 99 74.7
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 9.9e-32 140.2 99 71.7
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 1.3e-31 139.8 100 73.0
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.3e-31 139.8 99 72.7
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 1.3e-31 139.8 99 74.7
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 1.3e-31 139.8 97 75.3
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 1.7e-31 139.4 96 75.0
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 2.2e-31 139.0 99 73.7
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 2.2e-31 139.0 95 74.7
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 3.8e-31 138.3 100 74.0
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 6.4e-31 137.5 96 72.9
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 8.4e-31 137.1 101 73.3
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 8.4e-31 137.1 95 75.8
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 1.4e-30 136.3 111 65.8
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 1.9e-30 136.0 99 72.7
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 7.1e-30 134.0 99 70.7
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 1.2e-29 133.3 97 74.2
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 3.5e-29 131.7 99 74.7
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 1.3e-28 129.8 95 71.6
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.7e-28 129.4 99 70.7
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 2.5e-27 125.6 98 67.3
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 3.3e-27 125.2 132 57.6
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 5.6e-27 124.4 96 68.8
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 9.6e-27 123.6 100 63.0
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 7.6e-24 114.0 98 63.3
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.6e-24 114.0 98 63.3
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 2.2e-23 112.5 96 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 3.8e-23 111.7 96 61.5
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.4e-22 109.0 73 78.1
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 3.2e-22 108.6 79 72.2
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 4.2e-22 108.2 99 58.6
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 9.3e-22 107.1 98 59.2
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 2.1e-21 105.9 96 57.3
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 6.0e-21 104.4 61 88.5
Peaxi162Scf00121g02312 Petunia axillaris HOM05D003390 ORTHO05D004189 6.0e-21 104.4 73 72.6
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 7.8e-21 104.0 86 67.4
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.7e-20 102.8 99 56.6
SHI35740 Sapria himalayana HOM05D003390 ORTHO05D004189 8.7e-20 100.5 74 70.3
Ciclev10031790m.g Citrus clementina HOM05D003390 ORTHO05D004189 4.0e-17 91.7 59 79.7
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 3.8e-15 85.1 93 54.8
SEGI_30082 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 9.3e-14 80.5 69 63.8
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.1e-10 69.3 79 54.4
FAN02G0419 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.1e-06 54.3 52 53.8


User provided reference genes

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