Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.0e-170 601.3 290 100.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 5.6e-164 580.9 290 96.9
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.0e-158 562.4 290 93.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.0e-157 560.1 290 92.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 9.8e-153 543.5 290 90.0
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.7e-150 535.4 290 87.6
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.9e-149 531.6 290 88.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.6e-147 525.0 316 81.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.0e-146 521.5 290 86.2
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.6e-139 498.4 290 81.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-138 496.9 290 81.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-137 493.4 290 81.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.0e-137 492.7 290 80.0
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-136 489.2 290 80.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 6.4e-136 487.6 290 78.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 8.4e-136 487.3 290 78.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.2e-135 485.3 292 78.1
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.1e-135 484.2 290 78.3
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 7.1e-135 484.2 290 77.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 3.5e-134 481.9 290 78.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-133 479.9 290 77.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.5e-132 476.5 290 77.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.9e-132 476.1 291 78.0
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 4.3e-132 474.9 290 77.6
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.3e-132 474.9 290 77.9
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 5.6e-132 474.6 290 76.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.3e-131 473.4 290 77.6
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.6e-131 473.0 290 76.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.1e-131 472.6 290 77.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.1e-131 472.6 290 76.2
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.1e-131 472.6 290 76.2
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.1e-131 472.6 290 77.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 8.1e-131 470.7 304 75.3
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.1e-131 470.7 290 76.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-130 470.3 285 78.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.1e-130 470.3 290 76.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 6.9e-130 467.6 290 75.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.2e-129 466.8 290 75.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.0e-129 466.1 290 76.6
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.9e-129 463.8 284 78.9
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.2e-128 462.6 292 76.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.9e-128 461.5 290 75.2
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 8.4e-128 460.7 290 76.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 7.1e-127 457.6 290 75.5
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.6e-126 456.4 290 75.5
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 7.9e-126 454.1 290 74.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.0e-125 453.8 288 72.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.3e-125 452.6 290 73.1
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-125 452.2 305 73.4
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.1e-124 450.3 308 71.4
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.5e-124 449.9 290 74.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.5e-124 449.1 269 77.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.5e-124 449.1 289 74.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-123 446.8 285 76.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-123 446.4 306 72.9
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.8e-123 445.7 305 72.1
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.8e-122 443.0 290 72.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.8e-122 443.0 290 71.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.4e-122 442.6 290 73.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.2e-121 440.3 290 72.8
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.6e-121 439.1 300 71.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.6e-121 439.1 306 71.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 4.5e-121 438.3 290 71.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.4e-119 432.6 290 70.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 9.3e-119 430.6 300 71.3
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.7e-118 429.1 297 71.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.6e-118 428.3 296 70.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 6.0e-118 427.9 290 70.3
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 7.9e-118 427.6 269 75.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.7e-117 424.5 291 68.4
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 7.4e-116 421.0 290 67.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.4e-116 421.0 290 69.0
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.6e-115 419.9 291 68.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.1e-115 419.5 291 68.0
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.7e-115 418.7 290 70.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 8.1e-115 417.5 292 67.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 8.1e-115 417.5 292 67.8
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.8e-114 416.4 290 70.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.8e-114 416.4 292 67.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.0e-114 415.2 291 67.4
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.2e-113 413.7 291 66.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-113 413.3 292 67.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-113 413.3 292 67.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.5e-113 413.3 292 67.1
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.6e-113 412.5 288 68.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 4.5e-113 411.8 292 67.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.3e-112 410.2 291 69.4
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.8e-112 408.7 291 67.0
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 6.5e-112 407.9 293 66.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.2e-111 405.6 290 70.7
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-111 405.6 227 83.3
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-110 402.9 294 65.6
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.1e-110 402.9 294 67.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.5e-110 402.1 271 70.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-109 400.6 294 66.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.9e-109 398.7 296 64.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.7e-109 397.5 276 71.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.5e-108 396.0 290 66.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 7.4e-108 394.4 273 67.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-107 393.7 297 68.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.0e-106 387.5 296 65.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.0e-104 384.0 309 61.5
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-104 383.6 295 67.1
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-103 379.8 259 72.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.5e-103 379.4 321 62.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.5e-103 378.3 293 62.5
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 6.1e-102 374.8 297 63.3
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.9e-100 369.8 309 59.2
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 3.7e-99 365.5 228 76.3
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.0e-97 359.8 202 83.2
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.4e-95 353.6 247 68.0
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 4.2e-95 352.1 293 57.0
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 7.2e-95 351.3 297 55.9
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.4e-95 350.9 298 56.0
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.3e-93 346.3 201 80.1
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-90 337.4 175 93.1
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.0e-88 330.9 299 55.5
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.8e-85 320.1 373 49.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.8e-85 320.1 290 56.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 2.2e-83 313.2 214 71.0
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.2e-79 299.3 183 79.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.4e-74 283.1 253 57.7
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-71 273.9 290 51.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.7e-70 268.9 237 55.7
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.2e-68 264.2 237 54.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-66 257.7 217 66.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-65 253.4 255 54.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.0e-64 248.8 231 57.1
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.8e-62 243.0 245 46.5
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 6.3e-59 231.9 209 56.9
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.5e-55 220.7 236 46.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.5e-55 219.9 272 42.6
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.0e-48 195.7 157 62.4
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.2e-43 180.3 241 45.6
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.9e-43 179.9 94 91.5
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.9e-42 177.2 239 45.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.9e-39 167.2 96 79.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 8.1e-38 161.8 165 55.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-36 157.9 124 65.3
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.4e-35 152.1 113 61.1
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 3.2e-34 149.8 109 65.1
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.2e-30 135.6 239 38.9
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 8.4e-27 125.2 70 87.1
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.2e-22 109.0 85 63.5
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 8.1e-22 108.6 62 77.4
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.9e-19 100.1 71 62.0
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.4e-19 99.0 45 95.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 8.4e-19 98.6 55 76.4
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.1e-17 94.0 65 69.2
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.7e-11 74.3 80 50.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-09 67.8 36 83.3
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.7e-08 62.4 62 50.0
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 9.6e-07 58.5 61 54.1


User provided reference genes

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