Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.7e-134 483.4 414 100.0
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.2e-87 327.8 470 72.6
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 3.9e-70 269.6 571 59.7
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 3.1e-67 260.0 200 79.0
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 7.6e-66 255.4 516 63.4
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.3e-57 228.0 163 70.6
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.3e-57 228.0 237 64.1
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.9e-57 226.9 163 69.9
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 1.2e-55 221.5 151 81.5
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.6e-55 221.1 203 67.0
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 2.7e-55 220.3 168 73.2
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 2.7e-55 220.3 121 85.1
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 6.1e-55 219.2 196 64.8
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 7.9e-55 218.8 196 68.4
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.0e-54 218.4 202 69.8
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 2.3e-54 217.2 120 82.5
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 8.8e-54 215.3 202 61.9
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 2.6e-53 213.8 118 83.1
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 5.7e-53 212.6 161 77.0
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 6.3e-52 209.1 167 65.3
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 1.8e-51 207.6 202 65.3
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 9.1e-51 205.3 199 57.3
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.0e-49 201.8 121 76.0
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 3.8e-49 199.9 201 63.2
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 3.8e-49 199.9 115 79.1
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 8.5e-49 198.7 165 60.0
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.1e-48 198.4 121 76.0
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.1e-48 198.4 221 65.2
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 9.4e-48 195.3 151 68.9
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 1.8e-46 191.0 118 72.0
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 2.3e-46 190.7 152 66.4
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 5.2e-46 189.5 110 76.4
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 5.2e-46 189.5 121 71.1
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 8.8e-46 188.7 196 68.9
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.5e-45 188.0 121 70.2
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 2.0e-45 187.6 120 70.8
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 2.0e-45 187.6 150 66.0
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 2.0e-45 187.6 122 71.3
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 2.6e-45 187.2 121 71.1
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 7.4e-45 185.7 191 55.5
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 7.4e-45 185.7 236 51.7
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.3e-44 184.9 115 72.2
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.8e-44 183.7 210 60.0
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 2.8e-44 183.7 121 70.2
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 4.8e-44 183.0 206 66.5
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 6.3e-44 182.6 215 59.5
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 8.2e-44 182.2 121 70.2
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 1.1e-43 181.8 205 53.2
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.1e-43 181.8 111 73.9
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.8e-43 181.0 165 52.7
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.8e-43 181.0 232 52.6
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 3.1e-43 180.3 234 52.6
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 4.1e-43 179.9 111 72.1
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 5.3e-43 179.5 208 52.9
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.6e-42 177.9 209 57.4
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.0e-42 177.6 169 63.3
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 2.0e-42 177.6 208 61.1
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.6e-42 177.2 169 66.3
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.6e-42 177.2 169 66.3
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.6e-42 177.2 169 66.3
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.6e-42 177.2 169 66.3
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 2.6e-42 177.2 121 67.8
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 4.5e-42 176.4 216 57.9
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 4.5e-42 176.4 108 77.8
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 5.9e-42 176.0 118 69.5
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 7.7e-42 175.6 206 57.3
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.0e-41 175.3 235 56.2
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.3e-41 174.9 204 58.8
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.7e-41 174.5 118 67.8
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 1.7e-41 174.5 240 54.2
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 1.7e-41 174.5 185 61.1
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 5.0e-41 172.9 120 67.5
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.0e-41 172.9 110 70.9
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 6.5e-41 172.6 108 72.2
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 6.5e-41 172.6 125 65.6
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 6.5e-41 172.6 125 65.6
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 6.5e-41 172.6 125 65.6
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 6.5e-41 172.6 125 65.6
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 6.5e-41 172.6 125 65.6
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 8.5e-41 172.2 111 71.2
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 1.1e-40 171.8 125 66.4
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.1e-40 171.8 118 66.1
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.5e-40 171.4 110 69.1
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 1.9e-40 171.0 209 57.9
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 1.9e-40 171.0 117 66.7
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.5e-40 170.6 110 70.0
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 4.2e-40 169.9 121 66.1
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.4e-40 168.7 160 66.2
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.4e-40 168.7 118 66.1
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 1.2e-39 168.3 212 59.0
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.7e-39 167.2 119 64.7
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 3.6e-39 166.8 153 68.0
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 3.6e-39 166.8 118 65.3
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 6.1e-39 166.0 118 68.6
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 6.1e-39 166.0 110 70.9
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.0e-38 165.2 120 64.2
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.0e-38 165.2 119 67.2
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.0e-38 165.2 185 49.2
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.4e-38 164.9 118 64.4
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 1.4e-38 164.9 209 51.7
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.4e-38 164.9 156 61.5
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 2.3e-38 164.1 115 68.7
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 2.3e-38 164.1 92 87.0
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 2.3e-38 164.1 111 65.8
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.3e-38 164.1 111 65.8
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 3.0e-38 163.7 115 65.2
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 3.0e-38 163.7 107 68.2
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.0e-38 163.3 179 48.6
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 5.2e-38 162.9 166 56.6
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.2e-37 161.8 171 59.6
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 1.5e-37 161.4 114 66.7
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 2.0e-37 161.0 223 57.8
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 2.6e-37 160.6 200 48.5
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.7e-37 159.5 115 63.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 7.5e-37 159.1 110 64.5
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 7.5e-37 159.1 120 60.8
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.7e-36 157.9 115 64.3
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 2.8e-36 157.1 205 52.7
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 4.8e-36 156.4 116 63.8
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 6.3e-36 156.0 174 58.6
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 8.2e-36 155.6 117 64.1
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.1e-35 155.2 117 61.5
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.4e-35 154.8 205 52.2
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.4e-35 154.8 116 64.7
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.8e-35 154.5 117 61.5
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.4e-35 154.1 159 53.5
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 2.4e-35 154.1 119 68.9
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 3.1e-35 153.7 221 50.2
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.3e-35 152.9 118 61.9
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 7.0e-35 152.5 162 55.6
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 2.7e-34 150.6 126 57.9
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 3.5e-34 150.2 115 63.5
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 7.7e-34 149.1 123 60.2
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 1.0e-33 148.7 162 55.6
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.2e-33 147.5 116 63.8
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 2.2e-33 147.5 192 43.2
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 5.0e-33 146.4 123 61.8
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.1e-32 145.2 122 58.2
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.9e-32 144.4 122 63.1
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.9e-32 144.4 117 59.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 4.2e-32 143.3 114 62.3
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 7.2e-32 142.5 113 60.2
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.6e-31 141.4 109 56.9
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.6e-31 141.4 115 58.3
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 3.0e-30 137.1 118 56.8
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 4.0e-30 136.7 110 58.2
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 1.2e-29 135.2 111 57.7
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 1.5e-29 134.8 107 56.1
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-29 134.8 111 57.7
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-29 134.8 111 57.7
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-29 134.8 111 57.7
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.4e-29 133.7 116 55.2
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 5.7e-29 132.9 123 53.7
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 7.5e-29 132.5 123 53.7
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 9.8e-29 132.1 119 59.7
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.3e-28 131.7 119 57.1
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.8e-28 130.6 108 53.7
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 3.7e-28 130.2 109 55.0
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 8.3e-28 129.0 112 55.4
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 2.4e-27 127.5 118 50.8
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 7.0e-27 125.9 159 56.0
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.2e-26 125.2 113 54.0
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.6e-26 124.8 109 56.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 1.3e-25 121.7 118 49.2
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.1e-24 118.6 90 55.6
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-24 117.5 126 49.2
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 1.6e-23 114.8 102 52.9
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 1.6e-23 114.8 109 53.2
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 3.1e-19 100.5 111 47.7
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 1.6e-18 98.2 135 43.0
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 3.3e-16 90.5 107 46.7
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 5.6e-16 89.7 129 42.6
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 2.3e-14 84.3 110 44.5
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 3.0e-14 84.0 46 69.6
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.2e-14 83.2 119 43.7
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.0e-13 81.3 67 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 1.8e-11 74.7 108 41.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.0e-10 71.2 117 36.8
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.3e-08 63.9 112 31.2
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 7.3e-08 62.8 114 33.3
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 1.8e-06 58.2 93 58.1
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.0e-06 57.0 87 34.5


User provided reference genes

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